Lineage for d1vb9b3 (1vb9 B:121-502)

  1. Root: SCOPe 2.08
  2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
    members of the family may contain various insert subdomains
    in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain
  6. Protein Maltogenic amylase, central domain [51465] (4 species)
    contains an additional N-terminal domain
  7. Species Thermoactinomyces vulgaris, TVAII [TaxId:2026] [51467] (12 PDB entries)
  8. Domain d1vb9b3: 1vb9 B:121-502 [119950]
    Other proteins in same PDB: d1vb9a1, d1vb9a2, d1vb9b1, d1vb9b2
    automated match to d1jl8a3
    complexed with ca

    has additional subdomain(s) that are not in the common domain

Details for d1vb9b3

PDB Entry: 1vb9 (more details), 2.2 Å

PDB Description: crystal structure of thermoactinomyces vulgaris r-47 alpha-amylase ii (tva ii) complexed with transglycosylated product
PDB Compounds: (B:) alpha-amylase II

SCOPe Domain Sequences for d1vb9b3:

Sequence; same for both SEQRES and ATOM records: (download)

>d1vb9b3 c.1.8.1 (B:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]}
vfttpewakeaviyqifperfangdpsndppgteqwakdarprhdsfyggdlkgvidrlp
yleelgvtalyftpifaspshhkydtadylaidpqfgdlptfrrlvdeahrrgikiilda
vfnhagdqffafrdvlqkgeqsrykdwffiedfpvsktsrtnyetfavqvpampklrten
pevkeylfdvarfwmeqgidgwrlnvanevdhafwrefrrlvkslnpdalivgeiwhdas
gwlmgdqfdsvmnylfresvirffatgeihaerfdaeltrarmlypeqaaqglwnlldsh
dterfltscggneakfrlavlfqmtylgtpliyygdeigmagatdpdcrrpmiweekeqn
rglfefykelirlrhrlasltr

SCOPe Domain Coordinates for d1vb9b3 are not available.

Timeline for d1vb9b3:

View in 3D
Domains from same chain:
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d1vb9b1, d1vb9b2
View in 3D
Domains from other chains:
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d1vb9a1, d1vb9a2, d1vb9a3