Lineage for d1v5ga2 (1v5g A:4-177)

  1. Root: SCOPe 2.08
  2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. Family c.36.1.0: automated matches [227300] (1 protein)
    not a true family
  6. Protein automated matches [227126] (21 species)
    not a true protein
  7. Species Aerococcus viridans [TaxId:1377] [254913] (2 PDB entries)
  8. Domain d1v5ga2: 1v5g A:4-177 [119851]
    Other proteins in same PDB: d1v5ga1
    automated match to d1poxa2
    complexed with fad, htl, mg

Details for d1v5ga2

PDB Entry: 1v5g (more details), 1.96 Å

PDB Description: Crystal Structure of the Reaction Intermediate between Pyruvate oxidase containing FAD and TPP, and Substrate Pyruvate
PDB Compounds: (A:) Pyruvate oxidase

SCOPe Domain Sequences for d1v5ga2:

Sequence; same for both SEQRES and ATOM records: (download)

>d1v5ga2 c.36.1.0 (A:4-177) automated matches {Aerococcus viridans [TaxId: 1377]}
nkiniglavmkileswgadtiygipsgtlsslmdamgeeennvkflqvkheevgamaavm
qskfggnlgvtvgsggpgashlinglydaamdnipvvailgsrpqrelnmdafqelnqnp
mydhiavynrrvayaeqlpklvdeaarmaiakrgvavlevpgdfakveidndqw

SCOPe Domain Coordinates for d1v5ga2 are not available.

Timeline for d1v5ga2:

View in 3D
Domains from same chain:
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d1v5ga1, d1v5ga3