SCOPe 2.05: Domain d1u28c_: 1u28 C:

Lineage for d1u28c_ (1u28 C:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.31: DHS-like NAD/FAD-binding domain [52466] (1 superfamily)
   3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456; Rossmann-like

4. Superfamily c.31.1: DHS-like NAD/FAD-binding domain [52467] (7 families)
   binds cofactor molecules in the opposite direction than classical Rossmann fold

5. Family c.31.1.4: Transhydrogenase domain III (dIII) [52484] (2 proteins)
   binds NADP, shares with the pyruvate oxidase FAD-binding domain a common ADP-binding mode
   automatically mapped to Pfam PF02233

6. Protein Transhydrogenase domain III (dIII) [52485] (3 species)

7. Species Rhodospirillum rubrum [TaxId:1085] [52488] (15 PDB entries)

8. Domain d1u28c_: 1u28 C: [119472]
   Other proteins in same PDB: d1u28a1, d1u28a2, d1u28b1, d1u28b2
   automated match to d1nm5c_
   complexed with gol, nad, nap

Details for d1u28c_

PDB Entry: 1u28, 2.3 Å

PDB Description: r. rubrum transhydrogenase asymmetric complex (di.nad+)2(diii.nadp+)1

PDB Compounds: (C:) NAD(P) transhydrogenase subunit beta

SCOPe Domain Sequences for d1u28c_:

Sequence; same for both SEQRES and ATOM records:

>d1u28c_ c.31.1.4 (C:) Transhydrogenase domain III (dIII) {Rhodospirillum rubrum [TaxId: 1085]}
svkagsaedaafimknaskviivpgygmavaqaqhalremadvlkkegvevsyaihpvag
rmpghmnvllaeanvpydevfeleeinssfqtadvafvigandvtnpaaktdpsspiygm
pildvekagtvlfikrsmasgyagvenelffrnntmmlfgdakkmteqivqamn

Timeline for d1u28c_:

• d1u28c_ first appeared in SCOP 1.73, called d1u28c1
  
• d1u28c_ appears in SCOPe 2.04
  
• d1u28c_ appears in SCOPe 2.06
  
• d1u28c_ appears in the current release, SCOPe 2.08