SCOPe 2.08: Domain d1svda1: 1svd A:143-460

Lineage for d1svda1 (1svd A:143-460)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.14: RuBisCo, C-terminal domain [51649] (2 families)
   automatically mapped to Pfam PF00016

5. Family c.1.14.1: RuBisCo, large subunit, C-terminal domain [51650] (2 proteins)
   N-terminal domain is alpha+beta

6. Protein Ribulose 1,5-bisphosphate carboxylase-oxygenase [51651] (14 species)

7. Species Halothiobacillus neapolitanus [TaxId:927] [141849] (1 PDB entry)
   Uniprot O85040 143-460

8. Domain d1svda1: 1svd A:143-460 [119057]
   Other proteins in same PDB: d1svda2, d1svdm1
   complexed with gol, so4

Details for d1svda1

PDB Entry: 1svd, 1.8 Å

PDB Description: The structure of Halothiobacillus neapolitanus RuBisCo

PDB Compounds: (A:) ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit

SCOPe Domain Sequences for d1svda1:

Sequence; same for both SEQRES and ATOM records:

>d1svda1 c.1.14.1 (A:143-460) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Halothiobacillus neapolitanus [TaxId: 927]}
gpphgiqverdkmnkygrpllgctikpklglsaknygravyeclrggldftkddeninsq
pfmrwrdrflfvqdatetaeaqtgerkghylnvtaptpeemykraefakeigapiimhdy
itggftantglakwcqdngvllhihramhavidrnpnhgihfrvltkilrlsggdhlhtg
tvvgklegdrastlgwidllresfipedrsrgiffdqdwgsmpgvfavasggihvwhmpa
lvnifgddsvlqfgggtlghpwgnaagaaanrvaleacvearnqgrdiekegkeiltaaa
qhspelkiametwkeikf

Timeline for d1svda1:

• d1svda1 first appeared in SCOP 1.73
  
• d1svda1 appears in SCOPe 2.07