SCOPe 2.04: Domain d1s6ma_: 1s6m A:

Lineage for d1s6ma_ (1s6m A:)

1. Root: SCOPe 2.04

2. Class d: Alpha and beta proteins (a+b) [53931] (380 folds)

3. Fold d.89: Origin of replication-binding domain, RBD-like [55463] (1 superfamily)
   alpha-beta-alpha-beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel sheet 41325

4. Superfamily d.89.1: Origin of replication-binding domain, RBD-like [55464] (6 families)

5. Family d.89.1.5: Relaxase domain [103120] (3 proteins)
   circular permutation of the common fold
   automatically mapped to Pfam PF08751

6. Protein automated matches [190037] (1 species)
   not a true protein

7. Species Escherichia coli [TaxId:562] [186757] (2 PDB entries)

8. Domain d1s6ma_: 1s6m A: [118875]
   automated match to d1omha_
   protein/DNA complex; complexed with ni

Details for d1s6ma_

PDB Entry: 1s6m, 2.28 Å

PDB Description: Conjugative Relaxase Trwc In Complex With Orit DNA. Metal-Bound Structure

PDB Compounds: (A:) TrwC

SCOPe Domain Sequences for d1s6ma_:

Sequence, based on SEQRES records:

>d1s6ma_ d.89.1.5 (A:) automated matches {Escherichia coli [TaxId: 562]}
mlshmvltrqdigraasyyedgaddyyakdgdasewqgkgaeelglsgevdskrfrella
gnigeghrimrsatrqdskerigldltfsapksvslqalvagdaeiikahdravartleq
aearaqarqkiqgktriettgnlvigkfrhetsrerdpqlhthavilnmtkrsdgqwral
kndeivkatrylgavynaelahelqklgyqlrygkdgnfdlahidrqqiegfskrteqia
ewyaargldpnsvsleqkqaakvlsrakktsvdrealraewqatakelgidfs

Sequence, based on observed residues (ATOM records):

>d1s6ma_ d.89.1.5 (A:) automated matches {Escherichia coli [TaxId: 562]}
mlshmvltrqdigraasyyedgaddydasewqgkgaeelglsgevdskrfrellagnige
ghrimrsatrqdskerigldltfsapksvslqalvagdaeiikahdravartleqaeara
qarqkiqgktriettgnlvigkfrhetsrerdpqlhthavilnmtkrsdgqwralkndei
vkatrylgavynaelahelqklgyqlrygkdgnfdlahidrqqiegfskrteqiaewyaa
rgldpnsvsleqkqaakvlsrakktsvdrealraewqatakelgidfs

Timeline for d1s6ma_:

• d1s6ma_ first appeared in SCOP 1.73, called d1s6ma1
  
• d1s6ma_ appears in SCOPe 2.03
  
• d1s6ma_ appears in SCOPe 2.05
  
• d1s6ma_ appears in the current release, SCOPe 2.08