SCOPe 2.08: Protein: phi29 DNA polymerase

Lineage for Protein: phi29 DNA polymerase

Root: SCOPe 2.08
Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)
Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
Superfamily e.8.1: DNA/RNA polymerases [56672] (9 families)
"palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
Family e.8.1.1: DNA polymerase I [56673] (5 proteins)
in the multi-domain class (e), this applies to domains with different numbers of (sub)domains than the most common domain
Protein phi29 DNA polymerase [118193] (1 species)

Species:

Bacteriophage phi-29 [TaxId:10756] [118194] (8 PDB entries)
Uniprot P03680

Domains for 1xhx:
1. Domain d1xhxa2: 1xhx A:188-575 [115306]
  Other proteins in same PDB: d1xhxa1, d1xhxb1, d1xhxc1, d1xhxd1
  complexed with mg, so4
2. Domain d1xhxb2: 1xhx B:188-575 [197643]
  Other proteins in same PDB: d1xhxa1, d1xhxb1, d1xhxc1, d1xhxd1
  automated match to d1xhxa2
  complexed with mg, so4
3. Domain d1xhxc2: 1xhx C:188-575 [197645]
  Other proteins in same PDB: d1xhxa1, d1xhxb1, d1xhxc1, d1xhxd1
  automated match to d1xhxa2
  complexed with mg, so4
4. Domain d1xhxd2: 1xhx D:188-575 [197647]
  Other proteins in same PDB: d1xhxa1, d1xhxb1, d1xhxc1, d1xhxd1
  automated match to d1xhxa2
  complexed with mg, so4
Domains for 1xhz:
1. Domain d1xhza2: 1xhz A:188-575 [115308]
  Other proteins in same PDB: d1xhza1, d1xhzb1, d1xhzc1, d1xhzd1
  protein/DNA complex
2. Domain d1xhzb2: 1xhz B:188-575 [197649]
  Other proteins in same PDB: d1xhza1, d1xhzb1, d1xhzc1, d1xhzd1
  automated match to d1xhxa2
  protein/DNA complex
3. Domain d1xhzc2: 1xhz C:188-575 [197651]
  Other proteins in same PDB: d1xhza1, d1xhzb1, d1xhzc1, d1xhzd1
  automated match to d1xhxa2
  protein/DNA complex
4. Domain d1xhzd2: 1xhz D:188-575 [197653]
  Other proteins in same PDB: d1xhza1, d1xhzb1, d1xhzc1, d1xhzd1
  automated match to d1xhxa2
  protein/DNA complex
Domains for 1xi1:
1. Domain d1xi1a2: 1xi1 A:188-575 [115310]
  Other proteins in same PDB: d1xi1a1, d1xi1b1
  protein/DNA complex; complexed with mg
2. Domain d1xi1b2: 1xi1 B:188-575 [197655]
  Other proteins in same PDB: d1xi1a1, d1xi1b1
  automated match to d1xhxa2
  protein/DNA complex; complexed with mg

Domains for 2ex3:

Domain d2ex3a2: 2ex3 A:188-575 [132499]
Other proteins in same PDB: d2ex3a1, d2ex3b1, d2ex3c1, d2ex3d1, d2ex3e1, d2ex3f1, d2ex3g1, d2ex3h1, d2ex3i1, d2ex3j1, d2ex3k1, d2ex3l1
protein/DNA complex; complexed with pb

Domain d2ex3c2: 2ex3 C:188-575 [132502]
Other proteins in same PDB: d2ex3a1, d2ex3b1, d2ex3c1, d2ex3d1, d2ex3e1, d2ex3f1, d2ex3g1, d2ex3h1, d2ex3i1, d2ex3j1, d2ex3k1, d2ex3l1
automated match to d2py5a2
protein/DNA complex; complexed with pb

Domain d2ex3e2: 2ex3 E:188-575 [132505]
Other proteins in same PDB: d2ex3a1, d2ex3b1, d2ex3c1, d2ex3d1, d2ex3e1, d2ex3f1, d2ex3g1, d2ex3h1, d2ex3i1, d2ex3j1, d2ex3k1, d2ex3l1
automated match to d2py5a2
protein/DNA complex; complexed with pb

Domain d2ex3g2: 2ex3 G:188-575 [132508]
Other proteins in same PDB: d2ex3a1, d2ex3b1, d2ex3c1, d2ex3d1, d2ex3e1, d2ex3f1, d2ex3g1, d2ex3h1, d2ex3i1, d2ex3j1, d2ex3k1, d2ex3l1
automated match to d2py5a2
protein/DNA complex; complexed with pb

Domain d2ex3i2: 2ex3 I:188-575 [132511]
Other proteins in same PDB: d2ex3a1, d2ex3b1, d2ex3c1, d2ex3d1, d2ex3e1, d2ex3f1, d2ex3g1, d2ex3h1, d2ex3i1, d2ex3j1, d2ex3k1, d2ex3l1
automated match to d2py5a2
protein/DNA complex; complexed with pb

Domain d2ex3k2: 2ex3 K:188-575 [132514]
Other proteins in same PDB: d2ex3a1, d2ex3b1, d2ex3c1, d2ex3d1, d2ex3e1, d2ex3f1, d2ex3g1, d2ex3h1, d2ex3i1, d2ex3j1, d2ex3k1, d2ex3l1
automated match to d2py5a2
protein/DNA complex; complexed with pb

Domains for 2py5:
1. Domain d2py5a2: 2py5 A:188-575 [149929]
  Other proteins in same PDB: d2py5a1, d2py5b1
  automated match to d1xhxa2
  protein/DNA complex; complexed with edo
2. Domain d2py5b2: 2py5 B:188-575 [149931]
  Other proteins in same PDB: d2py5a1, d2py5b1
  automated match to d1xhxa2
  protein/DNA complex; complexed with edo
Domains for 2pyj:
1. Domain d2pyja2: 2pyj A:188-575 [149944]
  Other proteins in same PDB: d2pyja1, d2pyjb1
  automated match to d1xhxa2
  protein/DNA complex; complexed with dgt, edo, mg, mn
2. Domain d2pyjb2: 2pyj B:188-575 [149946]
  Other proteins in same PDB: d2pyja1, d2pyjb1
  automated match to d1xhxa2
  protein/DNA complex; complexed with dgt, edo, mg, mn
Domain for 2pyl:
- Domain d2pyla2: 2pyl A:188-575 [149948]
  Other proteins in same PDB: d2pyla1
  automated match to d1xhxa2
  protein/DNA complex; complexed with edo, mg, ttp
Domains for 2pzs:
1. Domain d2pzsa2: 2pzs A:188-575 [149966]
  Other proteins in same PDB: d2pzsa1, d2pzsb1, d2pzsc1, d2pzsd1
  automated match to d1xhxa2
  protein/DNA complex
2. Domain d2pzsb2: 2pzs B:188-575 [149968]
  Other proteins in same PDB: d2pzsa1, d2pzsb1, d2pzsc1, d2pzsd1
  automated match to d1xhxa2
  protein/DNA complex
3. Domain d2pzsc2: 2pzs C:188-575 [149970]
  Other proteins in same PDB: d2pzsa1, d2pzsb1, d2pzsc1, d2pzsd1
  automated match to d1xhxa2
  protein/DNA complex
4. Domain d2pzsd2: 2pzs D:188-574 [149972]
  Other proteins in same PDB: d2pzsa1, d2pzsb1, d2pzsc1, d2pzsd1
  automated match to d1xhxa2
  protein/DNA complex

More info for Protein phi29 DNA polymerase from e.8.1.1: DNA polymerase I

Timeline for Protein phi29 DNA polymerase from e.8.1.1: DNA polymerase I:

Protein phi29 DNA polymerase from e.8.1.1: DNA polymerase I first appeared in SCOP 1.71
Protein phi29 DNA polymerase from e.8.1.1: DNA polymerase I appears in SCOPe 2.07