Lineage for Species: Rice (Oryza sativa) [TaxId: 4530]

  1. Root: SCOPe 2.08
  2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. Fold d.58: Ferredoxin-like [54861] (62 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. Superfamily d.58.9: RuBisCO, large subunit, small (N-terminal) domain [54966] (2 families) (S)
    C-terminal domain is beta/alpha barrel
  5. Family d.58.9.1: Ribulose 1,5-bisphosphate carboxylase-oxygenase [54967] (1 protein)
  6. Protein Ribulose 1,5-bisphosphate carboxylase-oxygenase [54968] (13 species)
  7. Species Rice (Oryza sativa) [TaxId:4530] [117976] (5 PDB entries)
    Uniprot P12089

PDB entries in Species: Rice (Oryza sativa) [TaxId: 4530]:

  1. Domain(s) for 1wdd:
    1. Domain d1wdda2: 1wdd A:11-150 [114529]
      Other proteins in same PDB: d1wdda1, d1wdde1, d1wdds_, d1wddw_
      complexed with cap, gol, mg
    2. Domain d1wdde2: 1wdd E:12-150 [114531]
      Other proteins in same PDB: d1wdda1, d1wdde1, d1wdds_, d1wddw_
      complexed with cap, gol, mg
  2. Domain(s) for 3axk:
    1. Domain d3axka1: 3axk A:20-150 [198946]
      Other proteins in same PDB: d3axka2, d3axkb2, d3axks_, d3axkt_
      automated match to d1wdda2
      complexed with gol, mg, ndp
    2. Domain d3axkb1: 3axk B:21-150 [198948]
      Other proteins in same PDB: d3axka2, d3axkb2, d3axks_, d3axkt_
      automated match to d1wdda2
      complexed with gol, mg, ndp
  3. Domain(s) for 3axm:
    1. Domain d3axma1: 3axm A:12-150 [198950]
      Other proteins in same PDB: d3axma2, d3axmb2, d3axmc2, d3axmd2, d3axme2, d3axmf2, d3axmg2, d3axmh2, d3axms_, d3axmt_, d3axmu_, d3axmv_, d3axmw_, d3axmx_, d3axmy_, d3axmz_
      automated match to d1wdda2
      complexed with 6pg, mg
    2. Domain d3axmb1: 3axm B:12-150 [198952]
      Other proteins in same PDB: d3axma2, d3axmb2, d3axmc2, d3axmd2, d3axme2, d3axmf2, d3axmg2, d3axmh2, d3axms_, d3axmt_, d3axmu_, d3axmv_, d3axmw_, d3axmx_, d3axmy_, d3axmz_
      automated match to d1wdda2
      complexed with 6pg, mg
    3. Domain d3axmc1: 3axm C:12-150 [198954]
      Other proteins in same PDB: d3axma2, d3axmb2, d3axmc2, d3axmd2, d3axme2, d3axmf2, d3axmg2, d3axmh2, d3axms_, d3axmt_, d3axmu_, d3axmv_, d3axmw_, d3axmx_, d3axmy_, d3axmz_
      automated match to d1wdda2
      complexed with 6pg, mg
    4. Domain d3axmd1: 3axm D:12-150 [198956]
      Other proteins in same PDB: d3axma2, d3axmb2, d3axmc2, d3axmd2, d3axme2, d3axmf2, d3axmg2, d3axmh2, d3axms_, d3axmt_, d3axmu_, d3axmv_, d3axmw_, d3axmx_, d3axmy_, d3axmz_
      automated match to d1wdda2
      complexed with 6pg, mg
    5. Domain d3axme1: 3axm E:12-150 [198958]
      Other proteins in same PDB: d3axma2, d3axmb2, d3axmc2, d3axmd2, d3axme2, d3axmf2, d3axmg2, d3axmh2, d3axms_, d3axmt_, d3axmu_, d3axmv_, d3axmw_, d3axmx_, d3axmy_, d3axmz_
      automated match to d1wdda2
      complexed with 6pg, mg
    6. Domain d3axmf1: 3axm F:12-150 [198960]
      Other proteins in same PDB: d3axma2, d3axmb2, d3axmc2, d3axmd2, d3axme2, d3axmf2, d3axmg2, d3axmh2, d3axms_, d3axmt_, d3axmu_, d3axmv_, d3axmw_, d3axmx_, d3axmy_, d3axmz_
      automated match to d1wdda2
      complexed with 6pg, mg
    7. Domain d3axmg1: 3axm G:12-150 [198962]
      Other proteins in same PDB: d3axma2, d3axmb2, d3axmc2, d3axmd2, d3axme2, d3axmf2, d3axmg2, d3axmh2, d3axms_, d3axmt_, d3axmu_, d3axmv_, d3axmw_, d3axmx_, d3axmy_, d3axmz_
      automated match to d1wdda2
      complexed with 6pg, mg
    8. Domain d3axmh1: 3axm H:12-150 [198964]
      Other proteins in same PDB: d3axma2, d3axmb2, d3axmc2, d3axmd2, d3axme2, d3axmf2, d3axmg2, d3axmh2, d3axms_, d3axmt_, d3axmu_, d3axmv_, d3axmw_, d3axmx_, d3axmy_, d3axmz_
      automated match to d1wdda2
      complexed with 6pg, mg
  4. Domain(s) for 6kyi:
    1. Domain d6kyia1: 6kyi A:21-150 [390851]
      Other proteins in same PDB: d6kyia2, d6kyib2, d6kyis_, d6kyit_
      automated match to d1wdde2
      complexed with gol, so4
    2. Domain d6kyib1: 6kyi B:20-150 [390727]
      Other proteins in same PDB: d6kyia2, d6kyib2, d6kyis_, d6kyit_
      automated match to d1wdde2
      complexed with gol, so4
  5. Domain(s) for 6kyj:
    1. Domain d6kyja1: 6kyj A:13-150 [390718]
      Other proteins in same PDB: d6kyja2, d6kyjc2, d6kyje2, d6kyjg2, d6kyjs_, d6kyju_, d6kyjw_, d6kyjy_
      automated match to d1wdde2
      complexed with gol, so4
    2. Domain d6kyjc1: 6kyj C:13-150 [390926]
      Other proteins in same PDB: d6kyja2, d6kyjc2, d6kyje2, d6kyjg2, d6kyjs_, d6kyju_, d6kyjw_, d6kyjy_
      automated match to d1wdde2
      complexed with gol, so4
    3. Domain d6kyje1: 6kyj E:13-150 [390703]
      Other proteins in same PDB: d6kyja2, d6kyjc2, d6kyje2, d6kyjg2, d6kyjs_, d6kyju_, d6kyjw_, d6kyjy_
      automated match to d1wdde2
      complexed with gol, so4
    4. Domain d6kyjg1: 6kyj G:13-150 [390733]
      Other proteins in same PDB: d6kyja2, d6kyjc2, d6kyje2, d6kyjg2, d6kyjs_, d6kyju_, d6kyjw_, d6kyjy_
      automated match to d1wdde2
      complexed with gol, so4

More info for Species Rice (Oryza sativa) [TaxId:4530] from d.58.9.1 Ribulose 1,5-bisphosphate carboxylase-oxygenase

Timeline for Species Rice (Oryza sativa) [TaxId:4530] from d.58.9.1 Ribulose 1,5-bisphosphate carboxylase-oxygenase: