SCOPe 2.08: Family a.4.5.61: PadR-like

Lineage for Family a.4.5.61: PadR-like

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
   core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down

4. Superfamily a.4.5: 'Winged helix' DNA-binding domain [46785] (86 families)
   contains a small beta-sheet (wing)

5. Family a.4.5.61: PadR-like [116807] (3 proteins)
   Pfam PF03551; related to the MarR-like family (Pfam PF01047)

Proteins:

1. Hypothetical protein AphA [116810] (1 species)
   contains extra C-terminal dimerisation domain

   • Species Vibrio cholerae [TaxId:666] [116811] (1 PDB entry)
     Uniprot Q9X399 # "winged helix" domain: 1-87, dimerisation domain: 91-179

2. Hypothetical protein TM0937 [140277] (1 species)

   • Species Thermotoga maritima [TaxId:2336] [140278] (1 PDB entry)
     Uniprot Q9X035 4-117

3. Predicted transcriptional regulator [116808] (1 species)
   monomeric

   • Species Clostridium thermocellum [TaxId:1515] [116809] (1 PDB entry)
     Uniprot Q4CEJ8 4-106

More info for Family a.4.5.61: PadR-like

Timeline for Family a.4.5.61: PadR-like:

• Family a.4.5.61: PadR-like first appeared in SCOP 1.71
  
• Family a.4.5.61: PadR-like appears in SCOPe 2.07