SCOPe 2.08: Domain d1ybeb1: 1ybe B:168-433

Lineage for d1ybeb1 (1ybe B:168-433)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.17: Nicotinate/Quinolinate PRTase C-terminal domain-like [51690] (3 families)
   incomplete beta/alpha barrel with parallel beta-sheet of 7 strands

5. Family c.1.17.2: Nicotinate phosphoribosyltransferase C-terminal domain-like [110910] (2 proteins)
   automatically mapped to Pfam PF04095

6. Protein Nicotinate phosphoribosyltransferase, C-terminal domain [110911] (5 species)

7. Species Agrobacterium tumefaciens [TaxId:358] [117391] (1 PDB entry)
   Uniprot Q8UIS9

8. Domain d1ybeb1: 1ybe B:168-433 [116607]
   Other proteins in same PDB: d1ybea2, d1ybeb2
   Structural genomics target

Details for d1ybeb1

PDB Entry: 1ybe, 2.5 Å

PDB Description: crystal structure of a nicotinate phosphoribosyltransferase

PDB Compounds: (B:) Nicotinate phosphoribosyltransferase

SCOPe Domain Sequences for d1ybeb1:

Sequence, based on SEQRES records:

>d1ybeb1 c.1.17.2 (B:168-433) Nicotinate phosphoribosyltransferase, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
gyftldvlyarakakmwekverlrelpglrisdfgtrrrhsflwqrwcvealkegigpaf
tgtsnvllamdsdleavgtnahelpmvvaalaqtneelaaapyqvlkdwnrlyggnlliv
lpdafgtaaflrnapewvadwtgfrpdsappieggekiiewwrkmgrdprtkmlifsdgl
dvdaivdtyrhfegrvrmsfgwgtnltndfagcapktiaslkpisivckvsdangrpavk
lsdnpqkatgdpaeverylkffgeed

Sequence, based on observed residues (ATOM records):

>d1ybeb1 c.1.17.2 (B:168-433) Nicotinate phosphoribosyltransferase, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
gyftldvlyarakakmwekverlrelpglrisdfgtrrrhsflwqrwcvealkegigpaf
tgtsnvllamdsdleavgtnahelpmvvaalaqtneelaaapyqvlkdwnrlyggnlliv
lpdafgtaaflrnapewvadwtgfrpdsappieggekiiewwrkmgrdprtkmlifsdgl
dvdaivdtyrhfegrvrmsfgwgtnltndfagcaplkpisivckvsdangrpavklsdnp
qkatgdpaeverylkffgeed

Timeline for d1ybeb1:

• d1ybeb1 first appeared in SCOP 1.71
  
• d1ybeb1 appears in SCOPe 2.07