SCOPe 2.08: Domain d1y65a1: 1y65 A:2-329

Lineage for d1y65a1 (1y65 A:2-329)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.7: NagZ-like [51553] (4 proteins)
   Pfam PF00933; Glycosyl hydrolase family 3 domain
   Some members have reversed beta strand compared to other members of fold

6. Protein Beta-hexosaminidase NagZ [117370] (1 species)

7. Species Vibrio cholerae [TaxId:666] [117371] (3 PDB entries)
   Uniprot Q9KU37

8. Domain d1y65a1: 1y65 A:2-329 [116495]
   Other proteins in same PDB: d1y65a2
   complexed with nag

Details for d1y65a1

PDB Entry: 1y65, 1.85 Å

PDB Description: crystal structure of beta-hexosaminidase from vibrio cholerae in complex with n-acetyl-d-glucosamine to a resolution of 1.85

PDB Compounds: (A:) Beta-hexosaminidase

SCOPe Domain Sequences for d1y65a1:

Sequence; same for both SEQRES and ATOM records:

>d1y65a1 c.1.8.7 (A:2-329) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]}
gplwldvagyelsaedreilqhptvggvilfgrnyhdnqqllalnkairqaakrpiligv
dqeggrvqrfregfsrippaqyyaraengvelaeqggwlmaaeliahdvdlsfapvldmg
fackaignrafgedvqtvlkhssaflrgmkavgmattgkhfpghgaviadshletpyder
etiaqdmaifraqieagvldammpahvvyphydaqpasgssywlkqvlreelgfkgivfs
ddlsmegaavmggpvershqalvagcdmilicnkreaavevldnlpimevpqaeallkkq
qfsyselkrlerwqqasanmqrlieqfs

Timeline for d1y65a1:

• d1y65a1 first appeared in SCOP 1.71, called d1y65a_
  
• d1y65a1 appears in SCOPe 2.07