Lineage for d1y1yb_ (1y1y B:)

  1. Root: SCOPe 2.05
  2. 1970697Class i: Low resolution protein structures [58117] (25 folds)
  3. 1972825Fold i.8: RNA polymerase [58180] (1 superfamily)
  4. 1972826Superfamily i.8.1: RNA polymerase [58181] (1 family) (S)
  5. 1972827Family i.8.1.1: RNA polymerase [58182] (2 proteins)
  6. 1972828Protein Complete 12-subunit RNA polymerase II complex [90261] (1 species)
  7. 1972829Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [90262] (23 PDB entries)
  8. 1972926Domain d1y1yb_: 1y1y B: [116377]
    protein/DNA complex; protein/RNA complex

Details for d1y1yb_

PDB Entry: 1y1y (more details), 4 Å

PDB Description: rna polymerase ii-tfiis-dna/rna complex
PDB Compounds: (B:) DNA-directed RNA polymerase II 140 kDa polypeptide

SCOPe Domain Sequences for d1y1yb_:

Sequence, based on SEQRES records: (download)

>d1y1yb_ i.8.1.1 (B:) Complete 12-subunit RNA polymerase II complex {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
desapitaedswavisaffrekglvsqqldsfnqfvdytlqdiicedstlileqlaqhtt
esdnisrkyeisfgkiyvtkpmvnesdgvthalypqearlrnltyssglfvdvkkrtyea
idvpgrelkyeliaeeseddsesgkvfigrlpimlrskncylseatesdlyklkecpfdm
ggyfiingsekvliaqersagnivqvfkkaapspishvaeirsalekgsrfistlqvkly
gregssartikatlpyikqdipiviifralgiipdgeilehicydvndwqmlemlkpcve
dgfviqdretaldfigrrgtalgikkekriqyakdilqkeflphitqlegfesrkafflg
yminrlllcaldrkdqddrdhfgkkrldlagpllaqlfktlfkkltkdifrymqrtveea
hdfnmklainaktitsglkyalatgnwgeqkkamssragvsqvlnrytysstlshlrrtn
tpigrdgklakprqlhnthwglvcpaetpegqacglvknlslmscisvgtdpmpiitfls
ewgmepledyvphqspdatrvfvngvwhgvhrnparlmetlrtlrrkgdinpevsmirdi
rekelkiftdagrvyrplfiveddeslghkelkvrkghiaklmateyqdieggfedveey
twssllneglveyidaeeeesiliamqpedlepaeaneendldvdpakrirvshhattft
hceihpsmilgvaasiipfpdhnqsprntyqsamgkqamgvfltnynvrmdtmanilyyp
qkplgttrameylkfrelpagqnaivaiacysgynqedsmimnqssidrglfrslffrsy
mdqekkygmsitetfekpqrtntlrmkhgtydkldddgliapgvrvsgedviigkttpis
pdeeelgqrtayhskrdastplrstengivdqvlvttnqdglkfvkvrvrttkipqigdk
fasrhgqkgtigityrredmpftaegivpdliinphaipsrmtvahliecllskvaalsg
negdaspftditvegiskllrehgyqsrgfevmynghtgkklmaqiffgptyyqrlrhmv
ddkiharargpmqvltrqpvegrsrdgglrfgemerdcmiahgaasflkerlmeasdafr
vhicgicglmtviaklnhnqfeckgcdnkidiyqihipyaakllfqelmamnitprlytd
rsrdf

Sequence, based on observed residues (ATOM records): (download)

>d1y1yb_ i.8.1.1 (B:) Complete 12-subunit RNA polymerase II complex {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
desapitaedswavisaffrekglvsqqldsfnqfvdytlqdiicedstliisfgkiyvt
kpmvnesdgvthalypqearlrnltyssglfvdvkkkvfigrlpimlrskncylseates
dlyklkecpfdmggyfiingsekvliaqersagnivqvfkkaapspishvaeirsalekg
srfistlqvklygregssartikatlpyikqdipiviifralgiipdgeilehicydvnd
wqmlemlkpcvedgfviqdretaldfigkekriqyakdilqkeflphitqlegfesrkaf
flgyminrlllcaldrkdqddrdhfgkkrldlagpllaqlfktlfkkltkdifrymqrtv
elainaktitsglkyalatgnwgeqkkamssragvsqvlnrytysstlshlrrtntpigr
dgklakprqlhnthwglvcpaetpegqacglvknlslmscisvgtdpmpiitflsewgme
pledyvphqspdatrvfvngvwhgvhrnparlmetlrtlrrkgdinpevsmirdirekel
kiftdagrvyrplfiveddeslghkelkvrkghiaklmateyqdeytwssllneglveyi
daeeeesiliamqpedlepaeadvdpakrirvshhattfthceihpsmilgvaasiipfp
dhnqsprntyqsamgkqamgvfltnynvrmdtmanilyypqkplgttrameylkfrelpa
gqnaivaiacysgynqedsmimnqssidrglfrslffrsymdqekkygmsitetfekpqr
tntlrmkhgtydkldddgliapgvrvsgedviigkttpisskrdastplrstengivdqv
lvttnqdglkfvkvrvrttkipqigdkfasrhgqkgtigityrredmpftaegivpdlii
nphaipsrmtvahliecllskvaalsgnegdaspftditvegiskllrehgyqsrgfevm
ynghtgkklmaqiffgptyyqrlrhmvddkiharargpmqvltrqpvegrsrdgglrfge
merdcmiahgaasflkerlmeasdafrvhicgicglmtviaklnhnqfeckgcdnkidiy
qihipyaakllfqelmamnitprlytdrsrdf

SCOPe Domain Coordinates for d1y1yb_:

Click to download the PDB-style file with coordinates for d1y1yb_.
(The format of our PDB-style files is described here.)

Timeline for d1y1yb_: