Lineage for d1y08a_ (1y08 A:)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2154577Fold d.3: Cysteine proteinases [54000] (1 superfamily)
    consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
  4. 2154578Superfamily d.3.1: Cysteine proteinases [54001] (24 families) (S)
    the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet
  5. 2155304Family d.3.1.12: IgG-specific endopeptidase IdeS (Sib38) [117762] (2 protein domains)
    automatically mapped to Pfam PF09028
  6. 2155305Protein IgG-specific endopeptidase IdeS (Sib38) [117763] (1 species)
  7. 2155306Species Streptococcus pyogenes [TaxId:1314] [117764] (2 PDB entries)
    Uniprot Q9F1R7 38-339 # SPy0861
  8. 2155307Domain d1y08a_: 1y08 A: [116280]
    complexed with so4

Details for d1y08a_

PDB Entry: 1y08 (more details), 1.93 Å

PDB Description: Structure of the Streptococcal Endopeptidase IdeS, a Novel Cysteine Proteinase with Strict Specificity for IgG
PDB Compounds: (A:) hypothetical protein SPy0861

SCOPe Domain Sequences for d1y08a_:

Sequence, based on SEQRES records: (download)

>d1y08a_ d.3.1.12 (A:) IgG-specific endopeptidase IdeS (Sib38) {Streptococcus pyogenes [TaxId: 1314]}
tsvwtkgvtppanftqgedvfhapyvanqgwyditktfngkddllsgaatagnmlhwwfd
qnkdqikryleehpekqkinfngeqmfdvkeaidtknhqldsklfeyfkekafpylstkh
lgvfpdhvidmfingyrlsltnhgptpvkegskdprggifdavftrgdqsklltsrhdfk
eknlkeisdlikkeltegkalglshtyanvrinhvinlwgadfdsngnlkaiyvtdsdsn
asigmkkyfvgvnsagkvaisakeikednigaqvlglftlstgqdswnqtn

Sequence, based on observed residues (ATOM records): (download)

>d1y08a_ d.3.1.12 (A:) IgG-specific endopeptidase IdeS (Sib38) {Streptococcus pyogenes [TaxId: 1314]}
tsvwtkgvtppanftqgedvfhapyvanqgwyditktfngkddllsgaatagnmlhwwfd
qnkdqikryleehpekqkinfngeqmfdvkeaidtknhqldsklfeyfkekafpylkhlg
vfpdhvidmfingyrlsltnhgptpvkegskdprggifdavftrgdqsklltsrhdfkek
nlkeisdlikkeltegkalglshtyrinhvinlwgadfdsngnlkaiyvtdsdsnasigm
kkyfvgvnsagkvaisakeikednigaqvlglftlstgqdswnqtn

SCOPe Domain Coordinates for d1y08a_:

Click to download the PDB-style file with coordinates for d1y08a_.
(The format of our PDB-style files is described here.)

Timeline for d1y08a_: