SCOPe 2.07: Domain d1xzpb1: 1xzp B:1-117

Lineage for d1xzpb1 (1xzp B:1-117)

1. Root: SCOPe 2.07

2. Class d: Alpha and beta proteins (a+b) [53931] (388 folds)

3. Fold d.250: Folate-binding domain [103024] (1 superfamily)
   duplication: consists of two beta(2)-alpha-beta(3)-alpha subdomains swapped with the first strands

4. Superfamily d.250.1: Folate-binding domain [103025] (2 families)
   some topological similarity to Formylmethanofuran:tetrahydromethanopterin formyltransferase

5. Family d.250.1.2: TrmE formyl-THF-binding domain [117997] (1 protein)
   dimeric biological unit; one subunit domain corresponds to one "unswapped" subdomain of the other family
   automatically mapped to Pfam PF10396

6. Protein TrmE formyl-THF-binding domain [117998] (1 species)

7. Species Thermotoga maritima [TaxId:2336] [117999] (2 PDB entries)
   Uniprot Q9WYA4

8. Domain d1xzpb1: 1xzp B:1-117 [116257]
   Other proteins in same PDB: d1xzpa1, d1xzpa2, d1xzpa4, d1xzpb2
   complexed with so4

Details for d1xzpb1

PDB Entry: 1xzp, 2.3 Å

PDB Description: Structure of the GTP-binding protein TrmE from Thermotoga maritima

PDB Compounds: (B:) Probable tRNA modification GTPase trmE

SCOPe Domain Sequences for d1xzpb1:

Sequence; same for both SEQRES and ATOM records:

>d1xzpb1 d.250.1.2 (B:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]}
mdtivavatppgkgaiailrlsgpdswkivqkhlrtrskivprkaihgwihengedvdev
vvvfykspksytgedmvevmchggplvvkklldlflksgarmaepgeftkraflngk

Timeline for d1xzpb1:

• d1xzpb1 first appeared in SCOP 1.71
  
• d1xzpb1 appears in SCOPe 2.06
  
• d1xzpb1 appears in the current release, SCOPe 2.08