SCOPe 2.08: Domain d1vpba_: 1vpb A:

Lineage for d1vpba_ (1vpb A:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.283: Putative modulator of DNA gyrase, PmbA/TldD [111282] (1 superfamily)
   consists of two different alpha+beta domains; d1: [duplication of alpha-beta(3)-alpha motif; 2 layers: a/b; antiparallel beta-sheet, order: 321456; strands 1, 2, 4 and 5 are twice longer than other secondary structures]; d2 [ complex fold; contains beta-barrel (n=5, S=10)]

4. Superfamily d.283.1: Putative modulator of DNA gyrase, PmbA/TldD [111283] (2 families)

5. Family d.283.1.1: Putative modulator of DNA gyrase, PmbA/TldD [111284] (2 proteins)
   Pfam PF01523

6. Protein Putative modulator of DNA gyrase BT3649 [118177] (1 species)

7. Species Bacteroides thetaiotaomicron [TaxId:818] [118178] (1 PDB entry)
   Uniprot Q8A1L2

8. Domain d1vpba_: 1vpb A: [113950]
   complexed with edo

Details for d1vpba_

PDB Entry: 1vpb, 1.75 Å

PDB Description: crystal structure of a putative modulator of dna gyrase (bt3649) from bacteroides thetaiotaomicron vpi-5482 at 1.75 a resolution

PDB Compounds: (A:) putative modulator of DNA gyrase

SCOPe Domain Sequences for d1vpba_:

Sequence, based on SEQRES records:

>d1vpba_ d.283.1.1 (A:) Putative modulator of DNA gyrase BT3649 {Bacteroides thetaiotaomicron [TaxId: 818]}
mitdenkklaqwamdyalkngcqaakvllysssntsfelrdakmdrlqqasegglslsly
vdgrygsistnrlnrkeletfikngidstrylakdearvladpsryykggkpdlklydak
faslnpddkiemakavaeealgkderiisvgssygdgedfayrlisngfegetkstwysl
saditirgegearpsaywyesslymndlikkgigqkalervlrklgqkkvqsgkytmvvd
pmnssrllspmisalngsalqqknsfllnklnekiasdrltltdephlvkasgaryfdne
giaterrsifdkgvlntyfidtynakkmgvdptisgssilvmetgdknldgliagvekgi
lvtgfnggnnnsstgdfsygiegfliengkltqpvsemnvtgnlitlwnslvatgndprl
nsswripslvfegvdfsgl

Sequence, based on observed residues (ATOM records):

>d1vpba_ d.283.1.1 (A:) Putative modulator of DNA gyrase BT3649 {Bacteroides thetaiotaomicron [TaxId: 818]}
mitdenkklaqwamdyalkngcqaakvllysssntsfelrdmdrlqqasegglslslyvd
grygsistnrlnrkeletfikngidstrylakdearvladpsryykggkpdlklydakfa
slnpddkiemakavaeealgkderiisvgssygdgedfayrlisngfegetkstwyslsa
ditirgegearpsaywyesslymndlikkgigqkalervlrklgqkkvqsgkytmvvdpm
nssrllspmisalngsalqqknsfllnklnekiasdrltltdephlvkasgaryfdnegi
aterrsifdkgvlntyfidtynakkmgvdptisgssilvmetgdknldgliagvekgilv
tgfnggnnnsstgdfsygiegfliengkltqpvsemnvtgnlitlwnslvatgndprlns
swripslvfegvdfsgl

Timeline for d1vpba_:

• d1vpba_ first appeared in SCOP 1.71
  
• d1vpba_ appears in SCOPe 2.07