SCOPe 2.08: Domain d1v9lb1: 1v9l B:180-421

Lineage for d1v9lb1 (1v9l B:180-421)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
   core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
   The nucleotide-binding modes of this and the next two folds/superfamilies are similar

4. Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

5. Family c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain [51883] (12 proteins)
   extra N-terminal helix displaces the C-terminal helix (following strand 6) from its usual position creating a family nicotineamide-binding site

6. Protein Glutamate dehydrogenase [51884] (8 species)

7. Species Pyrobaculum islandicum [TaxId:2277] [117436] (1 PDB entry)
   Uniprot Q9Y8I4

8. Domain d1v9lb1: 1v9l B:180-421 [113585]
   Other proteins in same PDB: d1v9la2, d1v9lb2, d1v9lc2, d1v9ld2, d1v9le2, d1v9lf2
   complexed with nad
   has additional insertions and/or extensions that are not grouped together

Details for d1v9lb1

PDB Entry: 1v9l, 2.8 Å

PDB Description: L-glutamate dehydrogenase from Pyrobaculum islandicum complexed with NAD

PDB Compounds: (B:) glutamate dehydrogenase

SCOPe Domain Sequences for d1v9lb1:

Sequence; same for both SEQRES and ATOM records:

>d1v9lb1 c.2.1.7 (B:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}
wgnpvreyatgfgvavatremakklwggiegktvaiqgmgnvgrwtaywlekmgakviav
sdingvayrkeglnveliqknkgltgpalvelfttkdnaefvknpdaifkldvdifvpaa
ienvirgdnaglvkarlvvegangpttpeaerilyergvvvvpdilanaggvimsylewv
enlqwyiwdeeetrkrlenimvnnvervykrwqrekgwtmrdaaivtaleriynamkirg
wi

Timeline for d1v9lb1:

• d1v9lb1 first appeared in SCOP 1.71
  
• d1v9lb1 appears in SCOPe 2.07