SCOPe 2.08: Domain d1v3yb_: 1v3y B:

Lineage for d1v3yb_ (1v3y B:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.167: Peptide deformylase [56419] (1 superfamily)
   alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix

4. Superfamily d.167.1: Peptide deformylase [56420] (2 families)
   nickel-dependent enzyme

5. Family d.167.1.1: Peptide deformylase [56421] (2 proteins)
   automatically mapped to Pfam PF01327

6. Protein Peptide deformylase [56422] (11 species)

7. Species Thermus thermophilus [TaxId:274] [118165] (1 PDB entry)
   Uniprot P43522

8. Domain d1v3yb_: 1v3y B: [113509]

Details for d1v3yb_

PDB Entry: 1v3y, 1.81 Å

PDB Description: The crystal structure of peptide deformylase from Thermus thermophilus HB8

PDB Compounds: (B:) Peptide deformylase

SCOPe Domain Sequences for d1v3yb_:

Sequence, based on SEQRES records:

>d1v3yb_ d.167.1.1 (B:) Peptide deformylase {Thermus thermophilus [TaxId: 274]}
vypirlygdpvlrrkarpvedfsgikrlaedmletmfeakgvglaapqiglsqrlfvave
yadepegeeerplrelvrrvyvvanpvityreglvegtegclslpglyseevpraerirv
eyqdeegrgrvlelegymarvfqheidhldgilfferlpkpkreafleanraelvrfqke
ar

Sequence, based on observed residues (ATOM records):

>d1v3yb_ d.167.1.1 (B:) Peptide deformylase {Thermus thermophilus [TaxId: 274]}
vypirlygdpvlrrkarpvedfsgikrlaedmletmfeakgvglaapqiglsqrlfvave
yvrrvyvvanpvityreglvegtegclslpglyseevpraerirveyqdeegrgrvlele
gymarvfqheidhldgilfferlpkpkreafleanraelvrfqkear

Timeline for d1v3yb_:

• d1v3yb_ first appeared in SCOP 1.71
  
• d1v3yb_ appears in SCOPe 2.07