SCOPe 2.08: Domain d1urjb_: 1urj B:

Lineage for d1urjb_ (1urj B:)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.58: Viral ssDNA binding protein [118207] (1 superfamily)
   2 domains; d1: [large alpha+beta domain subdivided into the 'head', 'neck' and 'shoulders' regions; in the 'neck', there is an OB-fold interrupted by large insertions]; d2: [all-alpha, 6 helices; orthogonal array]

4. Superfamily e.58.1: Viral ssDNA binding protein [118208] (1 family)
   automatically mapped to Pfam PF00747

5. Family e.58.1.1: Viral ssDNA binding protein [118209] (1 protein)
   Pfam PF00747

6. Protein Infected cell protein 8, ICP8 [118210] (1 species)

7. Species Herpes simplex virus 1 [TaxId:10298] [118211] (1 PDB entry)
   Uniprot P04296 9-1130 # d1: 9-1038; d2: 1048-1130

8. Domain d1urjb_: 1urj B: [113411]
   complexed with hg, zn

Details for d1urjb_

PDB Entry: 1urj, 3 Å

PDB Description: single stranded dna-binding protein(icp8) from herpes simplex virus-1

PDB Compounds: (B:) major DNA-binding protein

SCOPe Domain Sequences for d1urjb_:

Sequence, based on SEQRES records:

>d1urjb_ e.58.1.1 (B:) Infected cell protein 8, ICP8 {Herpes simplex virus 1 [TaxId: 10298]}
ttikvppgplgyvyaracpsegiellallsarsgdsdvavaplvvgltvesgfeanvavv
vgsrttglggtavslkltpshysssvyvfhggrhldpstqapnltrlcerarrhfgfsdy
tprpgdlkhettgealcerlgldpdrallylvvtegfkeavcinntflhlggsdkvtigg
aevhripvyplqlfmpdfsrviaepfnanhrsigekftyplpffnrplnrllfeavvgpa
avalrsrnvdavaraaahlafdenhegaalpaditftafeasqgktprggrdgggkgaag
gfeqrlasvmagdaalalesivsmavfdepptdisawplfegqdtaaaranavgaylara
aglvgamvfstnsalhltevddagpadpkdhskpsfyrfflvpgthvaanpqvdreghvv
pgfegrptaplvggtqefagehlamlsgfspallakmlfylercdgavivgrqemdvfry
vadsnqtdvpcnlctfdtrhacvhttlmrlrarhpkfasaargaigvfgtmnsmysdcdv
lgnyaafsalkradgsetartimqetyraatervmaeletlqyvdqavptamgrletiit
nrealhtvvnnvrqvvdreveqlmrnlvegrnfkfrdglgeanhamsltldpyacgpcpl
lqllgrrsnlavyqdlalsqchgvfagqsvegrnfrnqfqpvlrrrvmdmfnngflsakt
ltvalsegaaicapsltagqtapaessfegdvarvtlgfpkelrvksrvlfagasanase
aakarvaslqsayqkpdkrvdillgplgfllkqfhaaifpngkppgsnqpnpqwfwtalq
rnqlparllsredietiafikkfsldygainfinlapnnvselamyymanqilrycdhst
yfintltaiiagsrrppsvqaaaawsaqggagleagaralmdavdahpgawtsmfascnl
lrpvmaarpmvvlglsiskyygmagndrvfqagnwaslmggknacpllifdrtrkfvlac
pragfvcaasslgggahesslceqlrgiiseggaavassvfvatvkslgprtqqlqiedw
lalledeylseemmeltaralergngewstdaalevaheaea

Sequence, based on observed residues (ATOM records):

>d1urjb_ e.58.1.1 (B:) Infected cell protein 8, ICP8 {Herpes simplex virus 1 [TaxId: 10298]}
ttikvppgplgyvyaracpsegiellallsarsgdsdvavaplvvgltvesgfeanvavv
vgsrttavslkltpshysssvyvfhggrhldpstqapnltrlcerarrhfgfsdytprpg
dlkhettgealcerlgldpdrallylvvtegfkeavcinntflhlggsdkvtiggaevhr
ipvyplqlfmpdfsrviaepfnanhrsigekftyplpffnrplnrllfeavvgpaavalr
srnvdavaraaahlafdenhegaalpaditftafggfeqrlasvmagdaalalesivsma
vfdepptdisawplfegqdtaaaranavgaylaraaglvgamvfstnsalhltevddagp
ahskpsfyrfflvpgthvaanpqvdreghvvpgfegrptaplvggtqefagehlamlsgf
spallakmlfylercdgavivmdvfryvadsnqtdvpcnlctfdtrhacvhttlmrlrar
hpkfasaargaigvfgtmnsmysdcdvlgnyaetyraatervmaeletlqyvdqavptam
grletiitnrealhtvvnnvrqvvdreveqlmrnlvefkfrdglgeanhamsltldpyac
gpcpllqllgrrsnlavyqdlalsqchgvfagqsvegrnfrnqfqpvlrrrvmdmfnngf
lsaktltvalsegaaicapsltagqtapaessfegdvarvtlgfpkelrvksrvlfsayq
kpdkrvdillgplgfllkqfhaaifpngkppgsnqpnpqwfwtalqrnqlparllsredi
etiafikkfsldygainfinlapnnvselamyymanqilrycdhstyfintltaiiagsr
rppsvqaaaawsaqggagleagaralmdavdahpgawtsmfascnllrpvmaarpmvvlg
lsiskyvfqagnwaslmggknacpllifdrtrkfvlacpragfvcaasslceqlrgiise
ggaavassvfvatvkslgprtqqlqiedwlalledeylseemmeltaralergngewstd
aalevaheaea

Timeline for d1urjb_:

• d1urjb_ first appeared in SCOP 1.71
  
• d1urjb_ appears in SCOPe 2.07