SCOP 1.71: Domain d1urja_: 1urj A:

Lineage for d1urja_ (1urj A:)

1. Root: SCOP 1.71

2. Class e: Multi-domain proteins (alpha and beta) [56572] (48 folds)

3. Fold e.58: Viral ssDNA binding protein [118207] (1 superfamily)
   2 domains; d1: [large alpha+beta domain subdivided into the 'head', 'neck' and 'shoulders' regions; in the 'neck', there is an OB-fold interrupted by large insertions]; d2: [all-alpha, 6 helices; orthogonal array]

4. Superfamily e.58.1: Viral ssDNA binding protein [118208] (1 family)

5. Family e.58.1.1: Viral ssDNA binding protein [118209] (1 protein)
   Pfam 00747

6. Protein Infected cell protein 8, ICP8 [118210] (1 species)

7. Species Herpes simplex virus 1 [TaxId:10298] [118211] (1 PDB entry)

8. Domain d1urja_: 1urj A: [113410]

Details for d1urja_

PDB Entry: 1urj, 3 Å

PDB Description: single stranded dna-binding protein(icp8) from herpes simplex virus-1

SCOP Domain Sequences for d1urja_:

Sequence, based on SEQRES records:

>d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes simplex virus 1}
ttikvppgplgyvyaracpsegiellallsarsgdsdvavaplvvgltvesgfeanvavv
vgsrttglggtavslkltpshysssvyvfhggrhldpstqapnltrlcerarrhfgfsdy
tprpgdlkhettgealcerlgldpdrallylvvtegfkeavcinntflhlggsdkvtigg
aevhripvyplqlfmpdfsrviaepfnanhrsigekftyplpffnrplnrllfeavvgpa
avalrsrnvdavaraaahlafdenhegaalpaditftafeasqgktprggrdgggkgaag
gfeqrlasvmagdaalalesivsmavfdepptdisawplfegqdtaaaranavgaylara
aglvgamvfstnsalhltevddagpadpkdhskpsfyrfflvpgthvaanpqvdreghvv
pgfegrptaplvggtqefagehlamlsgfspallakmlfylercdgavivgrqemdvfry
vadsnqtdvpcnlctfdtrhacvhttlmrlrarhpkfasaargaigvfgtmnsmysdcdv
lgnyaafsalkradgsetartimqetyraatervmaeletlqyvdqavptamgrletiit
nrealhtvvnnvrqvvdreveqlmrnlvegrnfkfrdglgeanhamsltldpyacgpcpl
lqllgrrsnlavyqdlalsqchgvfagqsvegrnfrnqfqpvlrrrvmdmfnngflsakt
ltvalsegaaicapsltagqtapaessfegdvarvtlgfpkelrvksrvlfagasanase
aakarvaslqsayqkpdkrvdillgplgfllkqfhaaifpngkppgsnqpnpqwfwtalq
rnqlparllsredietiafikkfsldygainfinlapnnvselamyymanqilrycdhst
yfintltaiiagsrrppsvqaaaawsaqggagleagaralmdavdahpgawtsmfascnl
lrpvmaarpmvvlglsiskyygmagndrvfqagnwaslmggknacpllifdrtrkfvlac
pragfvcaasslgggahesslceqlrgiiseggaavassvfvatvkslgprtqqlqiedw
lalledeylseemmeltaralergngewstdaalevaheaea

Sequence, based on observed residues (ATOM records):

>d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes simplex virus 1}
ttikvppgplgyvyaracpsegiellallsarsgdsdvavaplvvgltvesgfeanvavv
vgsrttavslkltpshysssvyvfhggrhldpstqapnltrlcerarrhfgfsdytprpg
dlkhettgealcerlgldpdrallylvvtegfkeavcinntflhlggsdkvtiggaevhr
ipvyplqlfmpdfsrviaepfnanhrsigekftyplpffnrplnrllfeavvgpaavalr
srnvdavaraaahlafdenhegaalpaditftafaggfeqrlasvmagdaalalesivsm
avfdepptdisawplfegqdtaaaranavgaylaraaglvgamvfstnsalhltevddag
pahskpsfyrfflvpgthvaanpqvdreghvvpgfegrptaplvggtqefagehlamlsg
fspallakmlfylercdgavivmdvfryvadsnqtdvpcnlctfdtrhacvhttlmrlra
rhpkfasaargaigvfgtmnsmysdcdvlgnyaetyraatervmaeletlqyvdqavpta
mgrletiitnrealhtvvnnvrqvvdreveqlmrnlvefkfrdglgeanhamsltldpya
cgpcpllqllgrrsnlavyqdlalsqchgvfagqsvegrnfrnqfqpvlrrrvmdmfnng
flsaktltvalsaicapsltagqtapaessfegdvarvtlgfpkelrvksrvlfsayqkp
dkrvdillgplgfllkqfhaaifpngkppgsnqpnpqwfwtalqrnqlparllsrediet
iafikkfsldygainfinlapnnvselamyymanqilrycdhstyfintltaiiagsrrp
psvqaaaawsaqggagleagaralmdavdahpgawtsmfascnllrpvmaarpmvvlgls
iskyvfqagnwaslmggknacpllifdrtrkfvlacpragfvcaasslceqlrgiisegg
aavassvfvatvkslgprtqqlqiedwlalledeylseemmeltaralergngewstdaa
levaheaea

Timeline for d1urja_:

• d1urja_ is new in SCOP 1.71
  
• d1urja_ appears in SCOP 1.73
  
• d1urja_ appears in the current release, SCOPe 2.08