SCOPe 2.02: Domain d1u9ja_: 1u9j A:

Lineage for d1u9ja_ (1u9j A:)

1. Root: SCOPe 2.02

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
   core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
   The nucleotide-binding modes of this and the next two folds/superfamilies are similar

4. Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

5. Family c.2.1.2: Tyrosine-dependent oxidoreductases [51751] (71 proteins)
   also known as short-chain dehydrogenases and SDR family
   parallel beta-sheet is extended by 7th strand, order 3214567; left-handed crossover connection between strands 6 and 7

6. Protein Polymyxin resistance protein ArnA (PrmI) [117419] (1 species)
   evolved new activities: UDP-glucuronic acid decarboxylase, UDP-4-amino-4-deoxy-L-arabinose formyltransferase

7. Species Escherichia coli [TaxId:562] [117420] (7 PDB entries)
   Uniprot P77398

8. Domain d1u9ja_: 1u9j A: [113243]
   complexed with so4

Details for d1u9ja_

PDB Entry: 1u9j, 2.4 Å

PDB Description: Crystal Structure of E. coli ArnA (PmrI) Decarboxylase Domain

PDB Compounds: (A:) Hypothetical protein yfbG

SCOPe Domain Sequences for d1u9ja_:

Sequence, based on SEQRES records:

>d1u9ja_ c.2.1.2 (A:) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}
rtrvlilgvngfignhlterllredhyevygldigsdaisrflnhphfhfvegdisihse
wieyhvkkcdvvlplvaiatpieytrnplrvfeldfeenlriirycvkyrkriifpstse
vygmcsdkyfdedhsnlivgpvnkprwiysvskqlldrviwaygekeglqftlfrpfnwm
gprldnlnaarigssraitqlilnlvegspiklidggkqkrcftdirdgiealyriiena
gnrcdgeiinignpeneasieelgemllasfekhplrhhfppfagfrvvesssyygkgyq
dvehrkpsirnahrcldwepkidmqetidetldfflrtvdlt

Sequence, based on observed residues (ATOM records):

>d1u9ja_ c.2.1.2 (A:) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}
rtrvlilgvngfignhlterllredhyevygldigsdaisrflnhphfhfvegdisihse
wieyhvkkcdvvlplvaiatpieytrnplrvfeldfeenlriirycvkyrkriifpstse
vygmcsdkyfdedhsnlivgpvnkprwiysvskqlldrviwaygekeglqftlfrpfnwm
gprldnlnaarigssraitqlilnlvegspiklidggkqkrcftdirdgiealyriiena
gnrcdgeiinignpeneasieelgemllasfekhplrhhfppfagfrvvesvehrkpsir
nahrcldwepkidmqetidetldfflrtvdlt

Timeline for d1u9ja_:

• d1u9ja_ first appeared in SCOP 1.71
  
• d1u9ja_ appears in SCOPe 2.01
  
• d1u9ja_ appears in SCOPe 2.03
  
• d1u9ja_ appears in the current release, SCOPe 2.08