SCOPe 2.06: Domain d1vk6a3: 1vk6 A:1-96

Lineage for d1vk6a3 (1vk6 A:1-96)

1. Root: SCOPe 2.06

2. Class d: Alpha and beta proteins (a+b) [53931] (385 folds)

3. Fold d.113: Nudix [55810] (1 superfamily)
   beta(2)-alpha-beta(3)-alpha; 3 layers: alpha/beta/alpha; mixed sheet
   contains beta-grasp motif

4. Superfamily d.113.1: Nudix [55811] (8 families)

5. Family d.113.1.4: NADH pyrophosphatase [103214] (1 protein)
   duplication: consists of two structurally similar domains separated by a rubredoxin-like zinc finger; the N-terminal domain has a rudiment Nudix fold, the C-terminal, probably catalytic, domain has the canonical fold

6. Protein NADH pyrophosphatase [103215] (1 species)

7. Species Escherichia coli [TaxId:562] [103216] (2 PDB entries)

8. Domain d1vk6a3: 1vk6 A:1-96 [111609]
   Other proteins in same PDB: d1vk6a4, d1vk6a5
   structural genomics
   complexed with mpd, zn

Details for d1vk6a3

PDB Entry: 1vk6, 2.2 Å

PDB Description: crystal structure of nadh pyrophosphatase (1790429) from escherichia coli k12 at 2.20 a resolution

PDB Compounds: (A:) NADH pyrophosphatase

SCOPe Domain Sequences for d1vk6a3:

Sequence; same for both SEQRES and ATOM records:

>d1vk6a3 d.113.1.4 (A:1-96) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}
mdriiekldhgwwvvsheqklwlpkgelpygeaanfdlvgqralqigewqgepvwlvqqq
rrhdmgsvrqvidldvglfqlagrgvqlaefyrshk

Timeline for d1vk6a3:

• d1vk6a3 first appeared in SCOP 1.71
  
• d1vk6a3 appears in SCOPe 2.05
  
• d1vk6a3 appears in SCOPe 2.07
  
• d1vk6a3 appears in the current release, SCOPe 2.08