SCOPe 2.08: Protein: E2 spike glycoprotein

Lineage for Protein: E2 spike glycoprotein

Root: SCOPe 2.08
Class h: Coiled coil proteins [57942] (7 folds)
Fold h.3: Stalk segment of viral fusion proteins [58063] (3 superfamilies)
core: trimeric coiled coil
Superfamily h.3.3: Coronavirus S2 glycoprotein [111474] (2 families)
Family h.3.3.1: Coronavirus spike glycoprotein S2 fragments [111475] (1 protein)
Protein E2 spike glycoprotein [111476] (2 species)

Species:

Human coronavirus (strain SARS) [TaxId:227859] [111478] (9 PDB entries)
Uniprot P59594 896-972,1142-1183
Uniprot Q6UZF0 914-949,1148-1193
1. Domains for 1wnc:
  1. Domain d1wnca_: 1wnc A: [109428]
  2. Domain d1wncb_: 1wnc B: [109429]
  3. Domain d1wncc_: 1wnc C: [109430]
  4. Domain d1wncd_: 1wnc D: [109431]
  5. Domain d1wnce_: 1wnc E: [109432]
  6. Domain d1wncf_: 1wnc F: [109433]
2. Domains for 1wyy:
  1. Domain d1wyya1: 1wyy A:890-973,A:1147-1188 [121469]
    complexed with cl
  2. Domain d1wyyb1: 1wyy B:892-973,B:1147-1188 [121470]
    automated match to d1wyya1
    complexed with cl
3. Domains for 1zv7:
  1. Domain d1zv7a1: 1zv7 A:1-38 [125692]
    complexed with cl
  2. Domain d1zv7b_: 1zv7 B: [125693]
    automated match to d1zv7a1
    complexed with cl
4. Domains for 1zv8:
  1. Domain d1zv8.1: 1zv8 A:1-49,B:5-31 [125694]
    complexed with act, cac, na, zn
  2. Domain d1zv8.2: 1zv8 C:2-47,D:5-33 [125695]
    complexed with act, cac, na, zn
  3. Domain d1zv8.3: 1zv8 E:1-49,F:4-33 [125696]
    complexed with act, cac, na, zn
  4. Domain d1zv8.4: 1zv8 G:1-50,H:1-34 [125697]
    complexed with act, cac, na, zn
  5. Domain d1zv8.5: 1zv8 I:1-49,J:4-33 [125698]
    complexed with act, cac, na, zn
  6. Domain d1zv8.6: 1zv8 K:1-50,L:3-36 [125699]
    complexed with act, cac, na, zn
5. Domain for 1zva:
  - Domain d1zvaa1: 1zva A:1-75 [125701]
6. Domains for 1zvb:
  1. Domain d1zvba1: 1zvb A:1-34 [125702]
  2. Domain d1zvbb_: 1zvb B: [125703]
    automated match to d1zvba1
  3. Domain d1zvbc_: 1zvb C: [125704]
    automated match to d1zvba1
7. Domains for 2beq:
  1. Domain d2beq.1: 2beq A:,D: [116703]
  2. Domain d2beq.2: 2beq B:,E: [116704]
  3. Domain d2beq.3: 2beq C:,F: [116705]
8. Domain for 2bez:
  - Domain d2bez.1: 2bez C:,F: [116716]
    complexed with gol
9. Domains for 2fxp:
  1. Domain d2fxpa1: 2fxp A:3-55 [134332]
    Other proteins in same PDB: d2fxpa2, d2fxpb3, d2fxpc3
  2. Domain d2fxpb2: 2fxp B:3-55 [134333]
    Other proteins in same PDB: d2fxpa2, d2fxpb3, d2fxpc3
    automated match to d2fxpa1
  3. Domain d2fxpc2: 2fxp C:3-55 [134334]
    Other proteins in same PDB: d2fxpa2, d2fxpb3, d2fxpc3
    automated match to d2fxpa1
Murine hepatitis virus, MHV [TaxId:11138] [111477] (2 PDB entries)
Uniprot P11224 969-1024,1224-1254
1. Domains for 1wdf:
  1. Domain d1wdfa_: 1wdf A: [109246]
  2. Domain d1wdfb_: 1wdf B: [109247]
2. Domains for 1wdg:
  1. Domain d1wdga_: 1wdg A: [109248]
  2. Domain d1wdgb_: 1wdg B: [109249]

More info for Protein E2 spike glycoprotein from h.3.3.1: Coronavirus spike glycoprotein S2 fragments

Timeline for Protein E2 spike glycoprotein from h.3.3.1: Coronavirus spike glycoprotein S2 fragments:

Protein E2 spike glycoprotein from h.3.3.1: Coronavirus spike glycoprotein S2 fragments first appeared in SCOP 1.69, called Protein E2 spike glycoprotein from h.3.3.1: Coronavirus S2 glycoprotein (Pfam 01601)
Protein E2 spike glycoprotein from h.3.3.1: Coronavirus spike glycoprotein S2 fragments was called Protein E2 spike glycoprotein from h.3.3.1: Coronavirus S2 glycoprotein in SCOPe 2.07