SCOP 1.75: Family d.126.1.6: Porphyromonas-type peptidylarginine deiminase

Lineage for Family d.126.1.6: Porphyromonas-type peptidylarginine deiminase

1. Root: SCOP 1.75

2. Class d: Alpha and beta proteins (a+b) [53931] (376 folds)

3. Fold d.126: Pentein, beta/alpha-propeller [55908] (1 superfamily)
   duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis

4. Superfamily d.126.1: Pentein [55909] (7 families)

5. Family d.126.1.6: Porphyromonas-type peptidylarginine deiminase [111155] (2 proteins)
   Pfam PF04371; functionally related to the amidinotransferase, similar active site

Proteins:

1. Agmatine iminohydrolase [111156] (3 species)

   1. Species Enterococcus faecalis [TaxId:1351] [160717] (1 PDB entry)
      Uniprot Q837U5 2-365

   2. Species Streptococcus mutans [TaxId:1309] [143807] (1 PDB entry)
      Uniprot Q8DW17 2-370

   3. Species Thale-cress (Arabidopsis thaliana) [TaxId:3702] [111157] (2 PDB entries)
      Uniprot Q8GWW7

2. Putative peptidyl-arginine deiminase [111158] (3 species)

   1. Species Chlorobium tepidum [TaxId:1097] [118089] (1 PDB entry)
      Uniprot Q8KCB6

   2. Species Helicobacter pylori J99 [TaxId:85963] [111159] (1 PDB entry)
      Uniprot Q9ZN18

   3. Species Porphyromonas gingivalis [TaxId:837] [143808] (1 PDB entry)
      Uniprot Q7MXM8 3-341

More info for Family d.126.1.6: Porphyromonas-type peptidylarginine deiminase

Timeline for Family d.126.1.6: Porphyromonas-type peptidylarginine deiminase:

• Family d.126.1.6: Porphyromonas-type peptidylarginine deiminase first appeared in SCOP 1.69, called Family d.126.1.6: Porphyromonas-type peptidylarginine deiminase (Pfam 04371)
  
• Family d.126.1.6: Porphyromonas-type peptidylarginine deiminase appears in SCOP 1.73
  
• Family d.126.1.6: Porphyromonas-type peptidylarginine deiminase appears in SCOPe 2.01
  
• Family d.126.1.6: Porphyromonas-type peptidylarginine deiminase appears in the current release, SCOPe 2.08