SCOPe 2.05: Family c.2.1.13: Ornithine cyclodeaminase-like

Lineage for Family c.2.1.13: Ornithine cyclodeaminase-like

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
   core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
   The nucleotide-binding modes of this and the next two folds/superfamilies are similar

4. Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

5. Family c.2.1.13: Ornithine cyclodeaminase-like [110436] (2 proteins)
   Pfam PF02423; contains additional alpha+beta dimerisation subdomain mostly formed by the N-terminal meander beta-sheet

Proteins:

1. Archaeal alanine dehydrogenase [110437] (1 species)

   • Species Archaeoglobus fulgidus [TaxId:2234] [110438] (2 PDB entries)
     Uniprot O28608 # Rossmann-fold core (101-292) begins with an N-terminal helix and ends with a beta-strand

2. Ornithine cyclodeaminase [117437] (1 species)

   • Species Pseudomonas putida [TaxId:303] [117438] (2 PDB entries)
     Uniprot Q88H32

More info for Family c.2.1.13: Ornithine cyclodeaminase-like

Timeline for Family c.2.1.13: Ornithine cyclodeaminase-like:

• Family c.2.1.13: Ornithine cyclodeaminase-like first appeared in SCOP 1.69, called Family c.2.1.13: Ornithine cyclodeaminase-like (Pfam 02423)
  
• Family c.2.1.13: Ornithine cyclodeaminase-like appears in SCOPe 2.04
  
• Family c.2.1.13: Ornithine cyclodeaminase-like appears in SCOPe 2.06
  
• Family c.2.1.13: Ornithine cyclodeaminase-like appears in the current release, SCOPe 2.08