SCOPe 2.08: Species: Deinococcus radiodurans [TaxId: 1299]

Lineage for Species: Deinococcus radiodurans [TaxId: 1299]

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.11: Enolase C-terminal domain-like [51604] (3 families)

(S)

binds metal ion (magnesium or manganese) in conserved site inside barrel
N-terminal alpha+beta domain is common to this superfamily

Family c.1.11.2: D-glucarate dehydratase-like [51609] (15 proteins)
Protein N-acylamino acid racemase [110372] (4 species)
Species Deinococcus radiodurans [TaxId:1299] [110374] (5 PDB entries)
Uniprot Q9RYA6

PDB entries in Species: Deinococcus radiodurans [TaxId: 1299]:

Domain(s) for 1r0m:
1. Domain d1r0ma1: 1r0m A:133-375 [104747]
  Other proteins in same PDB: d1r0ma2, d1r0mb2, d1r0mc2, d1r0md2
2. Domain d1r0mb1: 1r0m B:133-375 [104749]
  Other proteins in same PDB: d1r0ma2, d1r0mb2, d1r0mc2, d1r0md2
3. Domain d1r0mc1: 1r0m C:133-375 [104751]
  Other proteins in same PDB: d1r0ma2, d1r0mb2, d1r0mc2, d1r0md2
4. Domain d1r0md1: 1r0m D:133-375 [104753]
  Other proteins in same PDB: d1r0ma2, d1r0mb2, d1r0mc2, d1r0md2
Domain(s) for 1xpy:
1. Domain d1xpya1: 1xpy A:133-375 [115810]
  Other proteins in same PDB: d1xpya2, d1xpyb2, d1xpyc2, d1xpyd2
  complexed with mg, nlq
2. Domain d1xpyb1: 1xpy B:133-375 [115812]
  Other proteins in same PDB: d1xpya2, d1xpyb2, d1xpyc2, d1xpyd2
  complexed with mg, nlq
3. Domain d1xpyc1: 1xpy C:133-375 [115814]
  Other proteins in same PDB: d1xpya2, d1xpyb2, d1xpyc2, d1xpyd2
  complexed with mg, nlq
4. Domain d1xpyd1: 1xpy D:133-375 [115816]
  Other proteins in same PDB: d1xpya2, d1xpyb2, d1xpyc2, d1xpyd2
  complexed with mg, nlq
Domain(s) for 1xs2:
1. Domain d1xs2a1: 1xs2 A:133-375 [115898]
  Other proteins in same PDB: d1xs2a2, d1xs2b2, d1xs2c2, d1xs2d2
  complexed with mg
2. Domain d1xs2b1: 1xs2 B:133-375 [115900]
  Other proteins in same PDB: d1xs2a2, d1xs2b2, d1xs2c2, d1xs2d2
  complexed with mg
3. Domain d1xs2c1: 1xs2 C:133-375 [115902]
  Other proteins in same PDB: d1xs2a2, d1xs2b2, d1xs2c2, d1xs2d2
  complexed with mg
4. Domain d1xs2d1: 1xs2 D:133-375 [115904]
  Other proteins in same PDB: d1xs2a2, d1xs2b2, d1xs2c2, d1xs2d2
  complexed with mg
Domain(s) for 2bah:
1. Domain d2baha2: 2bah A:133-375 [303567]
  Other proteins in same PDB: d2baha1, d2bahb1, d2bahc1, d2bahd1
  automated match to d2fkpa1
  mutant
2. Domain d2bahb2: 2bah B:133-375 [303569]
  Other proteins in same PDB: d2baha1, d2bahb1, d2bahc1, d2bahd1
  automated match to d2fkpa1
  mutant
3. Domain d2bahc2: 2bah C:133-375 [303571]
  Other proteins in same PDB: d2baha1, d2bahb1, d2bahc1, d2bahd1
  automated match to d2fkpa1
  mutant
4. Domain d2bahd2: 2bah D:133-375 [303573]
  Other proteins in same PDB: d2baha1, d2bahb1, d2bahc1, d2bahd1
  automated match to d2fkpa1
  mutant
Domain(s) for 2fkp:
1. Domain d2fkpa1: 2fkp A:133-375 [133665]
  Other proteins in same PDB: d2fkpa2, d2fkpb1, d2fkpc1, d2fkpd1
  mutant
2. Domain d2fkpb2: 2fkp B:133-375 [197920]
  Other proteins in same PDB: d2fkpa2, d2fkpb1, d2fkpc1, d2fkpd1
  automated match to d2fkpa1
  mutant
3. Domain d2fkpc2: 2fkp C:133-375 [197922]
  Other proteins in same PDB: d2fkpa2, d2fkpb1, d2fkpc1, d2fkpd1
  automated match to d2fkpa1
  mutant
4. Domain d2fkpd2: 2fkp D:133-375 [197924]
  Other proteins in same PDB: d2fkpa2, d2fkpb1, d2fkpc1, d2fkpd1
  automated match to d2fkpa1
  mutant

More info for Species Deinococcus radiodurans [TaxId:1299] from c.1.11.2 N-acylamino acid racemase

Timeline for Species Deinococcus radiodurans [TaxId:1299] from c.1.11.2 N-acylamino acid racemase:

Species Deinococcus radiodurans [TaxId:1299] from c.1.11.2 N-acylamino acid racemase first appeared in SCOP 1.69
Species Deinococcus radiodurans [TaxId:1299] from c.1.11.2 N-acylamino acid racemase appears in SCOPe 2.07