Lineage for Protein: N-acylamino acid racemase

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2086988Superfamily c.1.11: Enolase C-terminal domain-like [51604] (3 families) (S)
    binds metal ion (magnesium or manganese) in conserved site inside barrel
    N-terminal alpha+beta domain is common to this superfamily
  5. 2087095Family c.1.11.2: D-glucarate dehydratase-like [51609] (15 protein domains)
  6. 2087216Protein N-acylamino acid racemase [110372] (4 species)

Species:

  1. 2087217Amycolatopsis sp. [TaxId:37632] [110373] (4 PDB entries)
    Uniprot Q44244 # similar activity to a remotely related O-succinylbenzoate synthase from E. coli
    1. Domains for 1sja:
      1. 2087230Domain d1sjaa1: 1sja A:126-368 [105608]
        Other proteins in same PDB: d1sjaa2, d1sjab2, d1sjac2, d1sjad2
        complexed with ame, mg
      2. 2087231Domain d1sjab1: 1sja B:126-368 [105610]
        Other proteins in same PDB: d1sjaa2, d1sjab2, d1sjac2, d1sjad2
        complexed with ame, mg
      3. 2087232Domain d1sjac1: 1sja C:126-368 [105612]
        Other proteins in same PDB: d1sjaa2, d1sjab2, d1sjac2, d1sjad2
        complexed with ame, mg
      4. 2087233Domain d1sjad1: 1sja D:126-368 [105614]
        Other proteins in same PDB: d1sjaa2, d1sjab2, d1sjac2, d1sjad2
        complexed with ame, mg
    2. Domains for 1sjb:
      1. 2087226Domain d1sjba1: 1sjb A:126-367 [105616]
        Other proteins in same PDB: d1sjba2, d1sjbb2, d1sjbc2, d1sjbd2
        complexed with mg, osb
      2. 2087227Domain d1sjbb1: 1sjb B:126-368 [105618]
        Other proteins in same PDB: d1sjba2, d1sjbb2, d1sjbc2, d1sjbd2
        complexed with mg, osb
      3. 2087228Domain d1sjbc1: 1sjb C:126-367 [105620]
        Other proteins in same PDB: d1sjba2, d1sjbb2, d1sjbc2, d1sjbd2
        complexed with mg, osb
      4. 2087229Domain d1sjbd1: 1sjb D:126-368 [105622]
        Other proteins in same PDB: d1sjba2, d1sjbb2, d1sjbc2, d1sjbd2
        complexed with mg, osb
    3. Domains for 1sjc:
      1. 2087222Domain d1sjca1: 1sjc A:126-367 [105624]
        Other proteins in same PDB: d1sjca2, d1sjcb2, d1sjcc2, d1sjcd2
        complexed with mg, smg
      2. 2087223Domain d1sjcb1: 1sjc B:126-368 [105626]
        Other proteins in same PDB: d1sjca2, d1sjcb2, d1sjcc2, d1sjcd2
        complexed with mg, smg
      3. 2087224Domain d1sjcc1: 1sjc C:126-367 [105628]
        Other proteins in same PDB: d1sjca2, d1sjcb2, d1sjcc2, d1sjcd2
        complexed with mg, smg
      4. 2087225Domain d1sjcd1: 1sjc D:126-368 [105630]
        Other proteins in same PDB: d1sjca2, d1sjcb2, d1sjcc2, d1sjcd2
        complexed with mg, smg
    4. Domains for 1sjd:
      1. 2087218Domain d1sjda1: 1sjd A:126-367 [105632]
        Other proteins in same PDB: d1sjda2, d1sjdb2, d1sjdc2, d1sjdd2
        complexed with npg
      2. 2087219Domain d1sjdb1: 1sjd B:126-368 [105634]
        Other proteins in same PDB: d1sjda2, d1sjdb2, d1sjdc2, d1sjdd2
        complexed with npg
      3. 2087220Domain d1sjdc1: 1sjd C:126-367 [105636]
        Other proteins in same PDB: d1sjda2, d1sjdb2, d1sjdc2, d1sjdd2
        complexed with npg
      4. 2087221Domain d1sjdd1: 1sjd D:126-367 [105638]
        Other proteins in same PDB: d1sjda2, d1sjdb2, d1sjdc2, d1sjdd2
        complexed with npg
  2. 2087234Deinococcus radiodurans [TaxId:1299] [110374] (5 PDB entries)
    Uniprot Q9RYA6
    1. Domains for 1r0m:
      1. 2087235Domain d1r0ma1: 1r0m A:133-375 [104747]
        Other proteins in same PDB: d1r0ma2, d1r0mb2, d1r0mc2, d1r0md2
      2. 2087236Domain d1r0mb1: 1r0m B:133-375 [104749]
        Other proteins in same PDB: d1r0ma2, d1r0mb2, d1r0mc2, d1r0md2
      3. 2087237Domain d1r0mc1: 1r0m C:133-375 [104751]
        Other proteins in same PDB: d1r0ma2, d1r0mb2, d1r0mc2, d1r0md2
      4. 2087238Domain d1r0md1: 1r0m D:133-375 [104753]
        Other proteins in same PDB: d1r0ma2, d1r0mb2, d1r0mc2, d1r0md2
    2. Domains for 1xpy:
      1. 2087247Domain d1xpya1: 1xpy A:133-375 [115810]
        Other proteins in same PDB: d1xpya2, d1xpyb2, d1xpyc2, d1xpyd2
        complexed with mg, nlq
      2. 2087248Domain d1xpyb1: 1xpy B:133-375 [115812]
        Other proteins in same PDB: d1xpya2, d1xpyb2, d1xpyc2, d1xpyd2
        complexed with mg, nlq
      3. 2087249Domain d1xpyc1: 1xpy C:133-375 [115814]
        Other proteins in same PDB: d1xpya2, d1xpyb2, d1xpyc2, d1xpyd2
        complexed with mg, nlq
      4. 2087250Domain d1xpyd1: 1xpy D:133-375 [115816]
        Other proteins in same PDB: d1xpya2, d1xpyb2, d1xpyc2, d1xpyd2
        complexed with mg, nlq
    3. Domains for 1xs2:
      1. 2087251Domain d1xs2a1: 1xs2 A:133-375 [115898]
        Other proteins in same PDB: d1xs2a2, d1xs2b2, d1xs2c2, d1xs2d2
        complexed with mg
      2. 2087252Domain d1xs2b1: 1xs2 B:133-375 [115900]
        Other proteins in same PDB: d1xs2a2, d1xs2b2, d1xs2c2, d1xs2d2
        complexed with mg
      3. 2087253Domain d1xs2c1: 1xs2 C:133-375 [115902]
        Other proteins in same PDB: d1xs2a2, d1xs2b2, d1xs2c2, d1xs2d2
        complexed with mg
      4. 2087254Domain d1xs2d1: 1xs2 D:133-375 [115904]
        Other proteins in same PDB: d1xs2a2, d1xs2b2, d1xs2c2, d1xs2d2
        complexed with mg
    4. Domains for 2bah:
      1. 2087239Domain d2baha2: 2bah A:133-375 [303567]
        Other proteins in same PDB: d2baha1, d2bahb1, d2bahc1, d2bahd1
        automated match to d2fkpa1
        mutant
      2. 2087240Domain d2bahb2: 2bah B:133-375 [303569]
        Other proteins in same PDB: d2baha1, d2bahb1, d2bahc1, d2bahd1
        automated match to d2fkpa1
        mutant
      3. 2087241Domain d2bahc2: 2bah C:133-375 [303571]
        Other proteins in same PDB: d2baha1, d2bahb1, d2bahc1, d2bahd1
        automated match to d2fkpa1
        mutant
      4. 2087242Domain d2bahd2: 2bah D:133-375 [303573]
        Other proteins in same PDB: d2baha1, d2bahb1, d2bahc1, d2bahd1
        automated match to d2fkpa1
        mutant
    5. Domains for 2fkp:
      1. 2087243Domain d2fkpa1: 2fkp A:133-375 [133665]
        Other proteins in same PDB: d2fkpa2, d2fkpb1, d2fkpc1, d2fkpd1
        mutant
      2. 2087244Domain d2fkpb2: 2fkp B:133-375 [197920]
        Other proteins in same PDB: d2fkpa2, d2fkpb1, d2fkpc1, d2fkpd1
        automated match to d2fkpa1
        mutant
      3. 2087245Domain d2fkpc2: 2fkp C:133-375 [197922]
        Other proteins in same PDB: d2fkpa2, d2fkpb1, d2fkpc1, d2fkpd1
        automated match to d2fkpa1
        mutant
      4. 2087246Domain d2fkpd2: 2fkp D:133-375 [197924]
        Other proteins in same PDB: d2fkpa2, d2fkpb1, d2fkpc1, d2fkpd1
        automated match to d2fkpa1
        mutant
  3. 2087255Enterococcus faecalis [TaxId:1351] [117382] (1 PDB entry)
    Uniprot Q838J7; EF0450; protein assignment by sequence similarity
  4. 2087258Listeria innocua [TaxId:1642] [117383] (1 PDB entry)
    Uniprot Q927X3; Lin2664; protein assignment by sequence similarity

More info for Protein N-acylamino acid racemase from c.1.11.2: D-glucarate dehydratase-like

Timeline for Protein N-acylamino acid racemase from c.1.11.2: D-glucarate dehydratase-like: