SCOPe 2.08: Family a.118.9.4: RNA Polymerase II carboxy-terminal domain (CTD)-interacting (CID) domain (RPR domain)

Lineage for Family a.118.9.4: RNA Polymerase II carboxy-terminal domain (CTD)-interacting (CID) domain (RPR domain)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.118: alpha-alpha superhelix [48370] (28 superfamilies)
   multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix

4. Superfamily a.118.9: ENTH/VHS domain [48464] (5 families)

5. Family a.118.9.4: RNA Polymerase II carboxy-terminal domain (CTD)-interacting (CID) domain (RPR domain) [109975] (4 proteins)
   found in proteins involved in regulation of nuclear pre-mRNA; some sequence similarity to VHS domain
   SMART 00582; Pfam PF04818

Proteins:

1. PCF11 protein [109976] (1 species)

   • Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [109977] (2 PDB entries)
     Uniprot P39081 1-140

2. RPRD1B [310742] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [310995] (3 PDB entries)

3. SCAF8; RNA-binding protein 16 [310741] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [310994] (4 PDB entries)

4. automated matches [190213] (2 species)
   not a true protein

   1. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [186970] (1 PDB entry)

   2. Species Human (Homo sapiens) [TaxId:9606] [311400] (1 PDB entry)

More info for Family a.118.9.4: RNA Polymerase II carboxy-terminal domain (CTD)-interacting (CID) domain (RPR domain)

Timeline for Family a.118.9.4: RNA Polymerase II carboxy-terminal domain (CTD)-interacting (CID) domain (RPR domain):

• Family a.118.9.4: RNA Polymerase II carboxy-terminal domain (CTD)-interacting (CID) domain (RPR domain) first appeared in SCOP 1.69, called Family a.118.9.4: RPR domain (SMART 00582 )
  
• Family a.118.9.4: RNA Polymerase II carboxy-terminal domain (CTD)-interacting (CID) domain (RPR domain) appears in SCOPe 2.07