SCOPe 2.08: Family a.4.13.3: YlxM/p13-like

Lineage for Family a.4.13.3: YlxM/p13-like

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
   core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down

4. Superfamily a.4.13: Sigma3 and sigma4 domains of RNA polymerase sigma factors [88659] (4 families)

5. Family a.4.13.3: YlxM/p13-like [109706] (2 proteins)
   Pfam PF04297; UPF0122
   structural and detectable sequence similarity to Sigma4 domain; contains extra C-terminal all-alpha oligomerization subdomain; forms different, helix-swapped dimers

Proteins:

1. Hypothetical protein SAV1236 [116818] (1 species)

   • Species Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId:1280] [116819] (1 PDB entry)
     Uniprot P67248

2. Hypothetical protein SPy1201 [109707] (1 species)

   • Species Streptococcus pyogenes [TaxId:1314] [109708] (1 PDB entry)
     Uniprot P67253

More info for Family a.4.13.3: YlxM/p13-like

Timeline for Family a.4.13.3: YlxM/p13-like:

• Family a.4.13.3: YlxM/p13-like first appeared in SCOP 1.69, called Family a.4.13.3: YlxM/p13-like (Pfam 04297; UPF0122)
  
• Family a.4.13.3: YlxM/p13-like appears in SCOPe 2.07