SCOPe 2.08: Family a.4.5.48: F93-like

Lineage for Family a.4.5.48: F93-like

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
   core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down

4. Superfamily a.4.5: 'Winged helix' DNA-binding domain [46785] (86 families)
   contains a small beta-sheet (wing)

5. Family a.4.5.48: F93-like [109674] (4 proteins)
   contains long helix in the C-terminal extension; forms dimer similar to the RTP and LysR dimers

Proteins:

1. Hypothetical protein F93 [109675] (1 species)

   • Species Sulfolobus virus-like particle SSV1 [TaxId:244589] [109676] (1 PDB entry)
     Uniprot P20222

2. STIV F93 [158292] (1 species)
   different dimerization mode than SSV1 F93

   • Species Sulfolobus turreted icosahedral virus [TaxId:269145] [158293] (1 PDB entry)
     Uniprot Q6Q0J9 5-93

3. Uncharacterized protein APE0880.1 [158290] (1 species)

   • Species Aeropyrum pernix [TaxId:56636] [158291] (1 PDB entry)
     Uniprot Q9YDN4 1-92

4. automated matches [190570] (1 species)
   not a true protein

   • Species Sulfolobus turreted icosahedral virus [TaxId:269145] [187561] (1 PDB entry)

More info for Family a.4.5.48: F93-like

Timeline for Family a.4.5.48: F93-like:

• Family a.4.5.48: F93-like first appeared in SCOP 1.69, called Family a.4.5.48: Hypothetical protein F93
  
• Family a.4.5.48: F93-like appears in SCOPe 2.07