SCOPe 2.07: Domain d1x8mb1: 1x8m B:2004-2268

Lineage for d1x8mb1 (1x8m B:2004-2268)

1. Root: SCOPe 2.07

2. Class b: All beta proteins [48724] (178 folds)

3. Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
   one turn of helix is made by two pairs of antiparallel strands linked with short turns
   has appearance of a sandwich of distinct architecture and jelly-roll topology

4. Superfamily b.82.1: RmlC-like cupins [51182] (25 families)

5. Family b.82.1.13: KduI-like [110318] (1 protein)
   Pfam PF04962: duplication: consists of two germin-like domains

6. Protein 5-keto-4-deoxyuronate isomerase KduI [110319] (2 species)

7. Species Escherichia coli [TaxId:562] [110320] (2 PDB entries)
   Uniprot Q46938 1-266

8. Domain d1x8mb1: 1x8m B:2004-2268 [109517]
   Other proteins in same PDB: d1x8ma2, d1x8mb2, d1x8mc2, d1x8md2, d1x8me2, d1x8mf2

Details for d1x8mb1

PDB Entry: 1x8m, 2.6 Å

PDB Description: x-ray structure of pectin degrading enzyme 5-keto 4-deoxyuronate isomerase from escherichia coli

PDB Compounds: (B:) 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase

SCOPe Domain Sequences for d1x8mb1:

Sequence, based on SEQRES records:

>d1x8mb1 b.82.1.13 (B:2004-2268) 5-keto-4-deoxyuronate isomerase KduI {Escherichia coli [TaxId: 562]}
dvrqsihsahaktldtqglrneflvekvfvadeytmvyshidriivggimpitktvsvgg
evgkqlgvsyflerrelgviniggagtitvdgqcyeighrdalyvgkgakevvfasidtg
tpakfyyncapahttyptkkvtpdevspvtlgdnltsnrrtinkyfvpdvletcqlsmgl
telapgnlwntmpchtherrmevyfyfnmdddacvfhmmgqpqetrhivmhneqavisps
wsihsgvgtkaytfiwgmvgenqvf

Sequence, based on observed residues (ATOM records):

>d1x8mb1 b.82.1.13 (B:2004-2268) 5-keto-4-deoxyuronate isomerase KduI {Escherichia coli [TaxId: 562]}
dvrqsihsahaktldtqglrneflvekvfvadeytmvyshidriivggimpitktvsvgg
evgkqlgvsyflerrelgviniggagtitvdgqcyeighrdalyvgkgakevvfasidtg
tpakfyyncapahttyptkkvtpdevspvtlgdnltsnrrtinkyfvpdvletcqlsmgl
telapgnlwntrmevyfyfnmdddacvfhmmgqpqetrhivmhneqavispswsihsgvg
tkaytfiwgmvgenqvf

Timeline for d1x8mb1:

• d1x8mb1 first appeared in SCOP 1.69, called d1x8mb_
  
• d1x8mb1 appears in SCOPe 2.06
  
• d1x8mb1 appears in the current release, SCOPe 2.08