Lineage for d1wdaa2 (1wda A:4-112)

  1. Root: SCOPe 2.08
  2. Class b: All beta proteins [48724] (180 folds)
  3. Fold b.6: Cupredoxin-like [49502] (2 superfamilies)
    sandwich; 7 strands in 2 sheets, greek-key
    variations: some members have additional 1-2 strands
  4. Superfamily b.6.1: Cupredoxins [49503] (8 families) (S)
    contains copper-binding site
  5. Family b.6.1.6: Peptidylarginine deiminase Pad4, N-terminal domain [110107] (1 protein)
    probably related to cupredoxins but lacking the metal-binding site
    automatically mapped to Pfam PF08526
  6. Protein Peptidylarginine deiminase Pad4, N-terminal domain [110108] (1 species)
  7. Species Human (Homo sapiens) [TaxId:9606] [110109] (16 PDB entries)
    Uniprot Q9UM07
  8. Domain d1wdaa2: 1wda A:4-112 [109244]
    Other proteins in same PDB: d1wdaa1, d1wdaa3
    complexed with bag, ca, so4

Details for d1wdaa2

PDB Entry: 1wda (more details), 2.3 Å

PDB Description: Crystal structure of human peptidylarginine deiminase type4 (PAD4) in complex with benzoyl-L-arginine amide
PDB Compounds: (A:) Protein-arginine deiminase type IV

SCOPe Domain Sequences for d1wdaa2:

Sequence, based on SEQRES records: (download)

>d1wdaa2 b.6.1.6 (A:4-112) Peptidylarginine deiminase Pad4, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
gtlirvtpeqpthavcvlgtltqldicssapedctsfsinaspgvvvdiahsppakkkst
gsstwpldpgvevtltmkaasgstgdqkvqisyygpktppvkallylta

Sequence, based on observed residues (ATOM records): (download)

>d1wdaa2 b.6.1.6 (A:4-112) Peptidylarginine deiminase Pad4, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
gtlirvtpeqpthavcvlgtltqldicssapetsfsinaspgvvvditwpldpgvevtlt
mkaasgstgdqkvqisyygpktppvkallylta

SCOPe Domain Coordinates for d1wdaa2 are not available.

Timeline for d1wdaa2:

Domains from same chain:
(mouse over for more information)
d1wdaa1, d1wdaa3