Lineage for d1wd9a3 (1wd9 A:294-663)

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2537906Fold d.126: Pentein, beta/alpha-propeller [55908] (1 superfamily)
    duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis
  4. 2537907Superfamily d.126.1: Pentein [55909] (8 families) (S)
  5. 2537972Family d.126.1.5: Peptidylarginine deiminase Pad4, catalytic C-terminal domain [111152] (1 protein)
    # functionally related to the amidinotransferase, similar active sites
    automatically mapped to Pfam PF03068
  6. 2537973Protein Peptidylarginine deiminase Pad4, catalytic C-terminal domain [111153] (1 species)
  7. 2537974Species Human (Homo sapiens) [TaxId:9606] [111154] (17 PDB entries)
    Uniprot Q9UM07
  8. 2537982Domain d1wd9a3: 1wd9 A:294-663 [109242]
    Other proteins in same PDB: d1wd9a1, d1wd9a2
    complexed with ca, so4

Details for d1wd9a3

PDB Entry: 1wd9 (more details), 2.6 Å

PDB Description: Calcium bound form of human peptidylarginine deiminase type4 (PAD4)
PDB Compounds: (A:) Protein-arginine deiminase type IV

SCOPe Domain Sequences for d1wd9a3:

Sequence, based on SEQRES records: (download)

>d1wd9a3 d.126.1.5 (A:294-663) Peptidylarginine deiminase Pad4, catalytic C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
apwimtpntqppqevyacsifenedflksvttlamkakcklticpeeenmddqwmqdeme
igyiqaphktlpvvfdsprnrglkefpikrvmgpdfgyvtrgpqtggisgldsfgnlevs
ppvtvrgkeyplgrilfgdscypsndsrqmhqalqdflsaqqvqapvklysdwlsvghvd
eflsfvpapdrkgfrlllasprscyklfqeqqneghgeallfegikkkkqqkiknilsnk
tlrehnsfvercidwnrellkrelglaesdiidipqlfklkefskaeaffpnmvnmlvlg
khlgipkpfgpvingrccleekvcslleplglqctfindfftyhirhgevhagtnvrrkp
fsfkwwnmvp

Sequence, based on observed residues (ATOM records): (download)

>d1wd9a3 d.126.1.5 (A:294-663) Peptidylarginine deiminase Pad4, catalytic C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
apwimtpntqppqevyacsedflksvttlamkakcklticpqwmqdemeigyiqaphktl
pvvfdsprnrglkefpikrvmgpdfgyvtrgpqtggisgldsfgnlevsppvtvrgkeyp
lgrilfgdscypsndsrqmhqalqdflsaqqvqapvklysdwlsvghvdeflsfvpapdr
kgfrlllasprscyklfqeqqneghgeallfqqkiknilsnktlrehnsfvercidwnre
llkrelglaesdiidipqlfklkefskaeaffpnmvnmlvlgkhlgipkpfgpvingrcc
leekvcslleplglqctfindfftyhirhgevhagtnvrrkpfsfkwwnmvp

SCOPe Domain Coordinates for d1wd9a3:

Click to download the PDB-style file with coordinates for d1wd9a3.
(The format of our PDB-style files is described here.)

Timeline for d1wd9a3: