SCOPe 2.05: Domain d1wd9a2: 1wd9 A:4-112

Lineage for d1wd9a2 (1wd9 A:4-112)

1. Root: SCOPe 2.05

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.6: Cupredoxin-like [49502] (2 superfamilies)
   sandwich; 7 strands in 2 sheets, greek-key
   variations: some members have additional 1-2 strands

4. Superfamily b.6.1: Cupredoxins [49503] (8 families)
   contains copper-binding site

5. Family b.6.1.6: Peptidylarginine deiminase Pad4, N-terminal domain [110107] (1 protein)
   probably related to cupredoxins but lacking the metal-binding site
   automatically mapped to Pfam PF08526

6. Protein Peptidylarginine deiminase Pad4, N-terminal domain [110108] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [110109] (12 PDB entries)
   Uniprot Q9UM07

8. Domain d1wd9a2: 1wd9 A:4-112 [109241]
   Other proteins in same PDB: d1wd9a1, d1wd9a3
   complexed with ca, so4

Details for d1wd9a2

PDB Entry: 1wd9, 2.6 Å

PDB Description: calcium bound form of human peptidylarginine deiminase type4 (pad4)

PDB Compounds: (A:) Protein-arginine deiminase type IV

SCOPe Domain Sequences for d1wd9a2:

Sequence, based on SEQRES records:

>d1wd9a2 b.6.1.6 (A:4-112) Peptidylarginine deiminase Pad4, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
gtlirvtpeqpthavcvlgtltqldicssapedctsfsinaspgvvvdiahsppakkkst
gsstwpldpgvevtltmkaasgstgdqkvqisyygpktppvkallylta

Sequence, based on observed residues (ATOM records):

>d1wd9a2 b.6.1.6 (A:4-112) Peptidylarginine deiminase Pad4, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
gtlirvtpeqpthavcvlgtltqldicssasfsinaspgvvvdiawpldpgvevtltmka
asgstgdqkvqisyyktppvkallylta

Timeline for d1wd9a2:

• d1wd9a2 first appeared in SCOP 1.69
  
• d1wd9a2 appears in SCOPe 2.04
  
• d1wd9a2 appears in SCOPe 2.06
  
• d1wd9a2 appears in the current release, SCOPe 2.08