SCOPe 2.08: Domain d1vlia2: 1vli A:2-296

Lineage for d1vlia2 (1vli A:2-296)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.10: Aldolase [51569] (9 families)
   Common fold covers whole protein structure

5. Family c.1.10.6: NeuB-like [110368] (3 proteins)
   Pfam PF03102

6. Protein Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain [110369] (1 species)

7. Species Bacillus subtilis [TaxId:1423] [110370] (1 PDB entry)
   Uniprot P39625

8. Domain d1vlia2: 1vli A:2-296 [108831]
   Other proteins in same PDB: d1vlia1
   Structural genomics target
   complexed with zn

Details for d1vlia2

PDB Entry: 1vli, 2.38 Å

PDB Description: crystal structure of spore coat polysaccharide biosynthesis protein spse (bsu37870) from bacillus subtilis at 2.38 a resolution

PDB Compounds: (A:) Spore coat polysaccharide biosynthesis protein spsE

SCOPe Domain Sequences for d1vlia2:

Sequence, based on SEQRES records:

>d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
aafqianktvgkdapvfiiaeaginhdgkldqafalidaaaeagadavkfqmfqadrmyq
kdpglyktaagkdvsifslvqsmempaewilplldycrekqviflstvcdegsadllqst
spsafkiasyeinhlpllkyvarlnrpmifstagaeisdvheawrtiraegnnqiaimhc
vakypappeysnlsvipmlaaafpeavigfsdhsehpteapcaavrlgakliekhftidk
nlpgadhsfalnpdelkemvdgirkteaelkqgitkpvsekllgssyktttaieg

Sequence, based on observed residues (ATOM records):

>d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
aafqianktvgkdapvfiiaeaginhdgkldqafalidaaaeagadavkfqmfqadrmyq
kdpdvsifslvqsmempaewilplldycrekqviflstvcdegsadllqstspsafkias
yeinhlpllkyvarlnrpmifstagaeisdvheawrtiraegnnqiaimhcvakypappe
ysnlsvipmlaaafpeavigfsdhsehpteapcaavrlgakliekhftidknlpgadhsf
alnpdelkemvdgirkteaelkqgitkpvsekllgssyktttaieg

Timeline for d1vlia2:

• d1vlia2 first appeared in SCOP 1.69
  
• d1vlia2 appears in SCOPe 2.07