SCOPe 2.08: Domain d1vl4b_: 1vl4 B:

Lineage for d1vl4b_ (1vl4 B:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.283: Putative modulator of DNA gyrase, PmbA/TldD [111282] (1 superfamily)
   consists of two different alpha+beta domains; d1: [duplication of alpha-beta(3)-alpha motif; 2 layers: a/b; antiparallel beta-sheet, order: 321456; strands 1, 2, 4 and 5 are twice longer than other secondary structures]; d2 [ complex fold; contains beta-barrel (n=5, S=10)]

4. Superfamily d.283.1: Putative modulator of DNA gyrase, PmbA/TldD [111283] (2 families)

5. Family d.283.1.1: Putative modulator of DNA gyrase, PmbA/TldD [111284] (2 proteins)
   Pfam PF01523

6. Protein PmbA-related protein TM0727 [111285] (1 species)

7. Species Thermotoga maritima [TaxId:2336] [111286] (1 PDB entry)
   Uniprot Q9WZI6; d1: 1-214; d2: 215-433

8. Domain d1vl4b_: 1vl4 B: [108719]
   Structural genomics target

Details for d1vl4b_

PDB Entry: 1vl4, 1.95 Å

PDB Description: crystal structure of a putative modulator of a dna gyrase (tm0727) from thermotoga maritima msb8 at 1.95 a resolution

PDB Compounds: (B:) pmbA-related protein

SCOPe Domain Sequences for d1vl4b_:

Sequence, based on SEQRES records:

>d1vl4b_ d.283.1.1 (B:) PmbA-related protein TM0727 {Thermotoga maritima [TaxId: 2336]}
mtfeefkdrlfalakkngvevqisfletrefslrlangdldqytdagkfnveikvlkdgk
tgtfrtqvlenpekcfeealsnlqvkdseekeyffeggkeyremetyvgrfeklsvkekm
dmakkahesaakdervvmvptvmykdmvikkiitntlgldvesqmdggflfamaiardan
prsgswyelartpedlnpeeigkraaeeaisligsktipsgkypvlmrntalldlmemfi
pmisaenvqknlsplkgklgeqvgnpavsikdlpyhpkglsstpfddegvpttekfvlen
gvlktflhnlktarkegveptgngfvggirpvnlmlmpgeksfeellkemdrgvviteve
gmhagansisgefslfakgywvengeiahgveditisgnfldllrkivlvgndvkvsqht
iapsvlvevldva

Sequence, based on observed residues (ATOM records):

>d1vl4b_ d.283.1.1 (B:) PmbA-related protein TM0727 {Thermotoga maritima [TaxId: 2336]}
mtfeefkdrlfalakkngvevqisfletrefslrlangdldqytdagkfnveikvlkdgk
tgtfrtqvlenpekcfeealsnlqvkkeyffeggkeyremetyvgrfeklsvkekmdmak
kahesaakdervvmvptvmykdmvikkiitntlgldvesqmdggflfamaiardanprsg
swyelartpedlnpeeigkraaeeaisligsktipsgkypvlmrntalldlmemfipmis
aenvqknlsplkgklgeqvgnpavsikdlpyhpkglsstpfddegvpttekfvlengvlk
tflhnlktarkegveptgngfvggirpvnlmlmpgeksfeellkemdrgvvitevegmha
gansisgefslfakgywvengeiahgveditisgnfldllrkivlvgndvkvsqhtiaps
vlvevldva

Timeline for d1vl4b_:

• d1vl4b_ first appeared in SCOP 1.69
  
• d1vl4b_ appears in SCOPe 2.07