SCOPe 2.06: Domain d1vkzb2: 1vkz B:4-93

Lineage for d1vkzb2 (1vkz B:4-93)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.30: PreATP-grasp domain [52439] (1 superfamily)
   3 layers: a/b/a; parallel or mixed beta-sheet of 4 to 6 strands
   possible rudiment form of Rossmann-fold domain

4. Superfamily c.30.1: PreATP-grasp domain [52440] (10 families)
   precedes the ATP-grasp domain common to all superfamily members, can contain a substrate-binding function

5. Family c.30.1.1: BC N-terminal domain-like [52441] (6 proteins)

6. Protein Glycinamide ribonucleotide synthetase (GAR-syn), N-domain [52444] (2 species)

7. Species Thermotoga maritima [TaxId:2336] [110500] (1 PDB entry)
   Uniprot Q9X0X7

8. Domain d1vkzb2: 1vkz B:4-93 [108702]
   Other proteins in same PDB: d1vkza1, d1vkza3, d1vkzb1, d1vkzb3
   Structural genomics target
   complexed with edo

Details for d1vkzb2

PDB Entry: 1vkz, 2.3 Å

PDB Description: Crystal structure of Phosphoribosylamine--glycine ligase (TM1250) from Thermotoga maritima at 2.30 A resolution

PDB Compounds: (B:) Phosphoribosylamine--glycine ligase

SCOPe Domain Sequences for d1vkzb2:

Sequence, based on SEQRES records:

>d1vkzb2 c.30.1.1 (B:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}
vrvhilgsggrehaigwafakqgyevhfypgnagtkrdgtnhpyegektlkaipeedivi
pgseeflvegvsnwrsnvfgpvkevarleg

Sequence, based on observed residues (ATOM records):

>d1vkzb2 c.30.1.1 (B:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}
vrvhilgsggrehaigwafakqgyevhfypgnagtkrdgtnhpyegektlkaipeedivi
pgseeflversnvfgpvkevarleg

Timeline for d1vkzb2:

• d1vkzb2 first appeared in SCOP 1.69
  
• d1vkzb2 appears in SCOPe 2.05
  
• d1vkzb2 appears in SCOPe 2.07
  
• d1vkzb2 appears in the current release, SCOPe 2.08