SCOP 1.71: Domain d1vkyb_: 1vky B:

Lineage for d1vkyb_ (1vky B:)

1. Root: SCOP 1.71

2. Class e: Multi-domain proteins (alpha and beta) [56572] (48 folds)

3. Fold e.53: QueA-like [111336] (1 superfamily)
   2 domains; d1 (1-64,174-335) [alpha/beta; 3 layers, a/b/a; mixed beta sheet of 9 strands, order: 219863457; strands 1, 5 and 8 are antiparallel to the rest]; d2 (65-142) [all-beta; barrel, closed (n=6, S=10); greek-key; topologically similar to the split barrel fold (scop_cf 50474)

4. Superfamily e.53.1: QueA-like [111337] (1 family)

5. Family e.53.1.1: QueA-like [111338] (1 protein)
   Pfam 02547

6. Protein Queuosine biosynthesis protein queA [111339] (2 species)

7. Species Thermotoga maritima [TaxId:243274] [111340] (1 PDB entry)

8. Domain d1vkyb_: 1vky B: [108697]
   Structural genomics target
   complexed with unl

Details for d1vkyb_

PDB Entry: 1vky, 2 Å

PDB Description: Crystal structure of S-adenosylmethionine tRNA ribosyltransferase (TM0574) from Thermotoga maritima at 2.00 A resolution

SCOP Domain Sequences for d1vkyb_:

Sequence, based on SEQRES records:

>d1vkyb_ e.53.1.1 (B:) Queuosine biosynthesis protein queA {Thermotoga maritima}
sefdyelppeliaqepveprdasrlmvlhrktqriehrifreiieylepgdllvlnvskv
iparlyarkktgasieillierleegiwkclvrpgqkvkkgtelvidedlsavclgrged
gtrilkfqpqddrlifekgrtplppyiknevpleryqtvyakeegsvaaptaglhftpel
ieklkkkgvqfaevvlhvgigtfrpvkveevekhkmheefyqvpketvrklretrergnr
ivavgtttvrtletiarlpeqeeyvgktdlfiyppfefklvdalvtnfhlprstllmlva
afagkdfvmeayreavkrryrffsfgdamlil

Sequence, based on observed residues (ATOM records):

>d1vkyb_ e.53.1.1 (B:) Queuosine biosynthesis protein queA {Thermotoga maritima}
sefdyelppeliaqepveprdasrlmvlhrktqriehrifreiieylepgdllvlnvskv
iparlyarkgasieillierleegiwkclvrpgqkvkkgtelvidedlsavclgrgedgt
rilkfqpqddrlifekgtaglhftpelieklkkkgvqfaevvlhvgiheefyqvpketvr
klretrergnrivavgtttvrtletiarlpeqeeyvgktdlfiyppfefklvdalvtnfh
lprstllmlvaafagkdfvmeayreavkrryrffsfgdamlil

Timeline for d1vkyb_:

• d1vkyb_ first appeared in SCOP 1.69
  
• d1vkyb_ appears in SCOP 1.73
  
• d1vkyb_ appears in the current release, SCOPe 2.08