SCOP 1.73: Domain d1vkpb_: 1vkp B:

Lineage for d1vkpb_ (1vkp B:)

1. Root: SCOP 1.73

2. Class d: Alpha and beta proteins (a+b) [53931] (334 folds)

3. Fold d.126: Pentein, beta/alpha-propeller [55908] (1 superfamily)
   duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis

4. Superfamily d.126.1: Pentein [55909] (7 families)

5. Family d.126.1.6: Porphyromonas-type peptidylarginine deiminase [111155] (2 proteins)
   Pfam PF04371; functionally related to the amidinotransferase, similar active site

6. Protein Agmatine iminohydrolase [111156] (2 species)

7. Species Thale-cress (Arabidopsis thaliana) [TaxId:3702] [111157] (2 PDB entries)

8. Domain d1vkpb_: 1vkp B: [108687]
   Structural genomics target
   complexed with edo, mg, mpo

Details for d1vkpb_

PDB Entry: 1vkp, 1.53 Å

PDB Description: x-ray structure of gene product from arabidopsis thaliana at5g08170, agmatine iminohydrolase

PDB Compounds: (B:) agmatine iminohydrolase

SCOP Domain Sequences for d1vkpb_:

Sequence, based on SEQRES records:

>d1vkpb_ d.126.1.6 (B:) Agmatine iminohydrolase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
spaehgyympaewdshaqtwigwperqdnwrhnalpaqrvfagvakaiskfepvtvcasp
aqwenarkqlpedirvvemsmndswfrdsgptfivrkrpvklsslnrniagidwnfnawg
gandgcyndwshdllvsrkilaleriprfqhsmileggsihvdgegtclvteecllnknr
nphmskeqieeelkkylgvqsfiwlprglygdedtnghidnmccfarpgvvllswtddet
dpqyersvealsvlsnsidargrkiqviklyipeplymteeessgitqdgeaiprlagtr
laasyvnfyianggiiapqfgdpirdkeairvlsdtfphhsvvgienareivlaggnihc
itqqqpaept

Sequence, based on observed residues (ATOM records):

>d1vkpb_ d.126.1.6 (B:) Agmatine iminohydrolase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
spaehgyympaewdshaqtwigwperqdnwrhnalpaqrvfagvakaiskfepvtvcasp
aqwenarkqlpedirvvemsmndswfrdsgptfivrkrnrniagidwnfnawggandgcy
ndwshdllvsrkilaleriprfqhsmileggsihvdgegtclvteecllnknrnphmske
qieeelkkylgvqsfiwlprglygdedtnghidnmccfarpgvvllswtddetdpqyers
vealsvlsnsidargrkiqviklyipeplymteeessgitqdgeaiprlagtrlaasyvn
fyianggiiapqfgdpirdkeairvlsdtfphhsvvgienareivlaggnihcitqqqpa
ept

Timeline for d1vkpb_:

• d1vkpb_ first appeared in SCOP 1.69
  
• d1vkpb_ appears in SCOP 1.71
  
• d1vkpb_ appears in SCOP 1.75
  
• d1vkpb_ appears in the current release, SCOPe 2.08