SCOPe 2.08: Domain d1vkgb_: 1vkg B:

Lineage for d1vkgb_ (1vkg B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.42: Arginase/deacetylase [52767] (1 superfamily)
   3 layers: a/b/a, parallel beta-sheet of 8 strands, order 21387456

4. Superfamily c.42.1: Arginase/deacetylase [52768] (3 families)

5. Family c.42.1.2: Histone deacetylase, HDAC [52773] (4 proteins)
   automatically mapped to Pfam PF00850

6. Protein Histone deacetylase 8, HDAC8 [110587] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [110588] (5 PDB entries)
   Uniprot Q9BY41 13-375 ! Uniprot Q9BY41

8. Domain d1vkgb_: 1vkg B: [108661]
   complexed with cri, na, zn

Details for d1vkgb_

PDB Entry: 1vkg, 2.2 Å

PDB Description: Crystal Structure of Human HDAC8 complexed with CRA-19156

PDB Compounds: (B:) Histone deacetylase 8

SCOPe Domain Sequences for d1vkgb_:

Sequence, based on SEQRES records:

>d1vkgb_ c.42.1.2 (B:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]}
vpvyiyspeyvsmcdslakipkrasmvhslieayalhkqmrivkpkvasmeematfhtda
ylqhlqkvsqegdddhpdsieyglgydcpategifdyaaaiggatitaaqclidgmckva
inwsggwhhakkdeasgfcylndavlgilrlrrkferilyvdldlhhgdgvedafsftsk
vmtvslhkfspgffpgtgdvsdvglgkgryysvnvpiqdgiqdekyyqicesvlkevyqa
fnpkavvlqlgadtiagdpmcsfnmtpvgigkclkyilqwqlatlilggggynlantarc
wtyltgvilgktlsseipdhefftaygpdyvleitpscrpdrnephriqqilnyikgnlk
hvv

Sequence, based on observed residues (ATOM records):

>d1vkgb_ c.42.1.2 (B:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]}
vpvyiyspeyvsmcdslakipkrasmvhslieayalhkqmrivkpkvasmeematfhtda
ylqhlqkvsqegddategifdyaaaiggatitaaqclidgmckvainwsggwhhakkdea
sgfcylndavlgilrlrrkferilyvdldlhhgdgvedafsftskvmtvslhkfspgffp
gtgdvsdvglgkgryysvnvpiqdgiqdekyyqicesvlkevyqafnpkavvlqlgadti
agdpmcsfnmtpvgigkclkyilqwqlatlilggggynlantarcwtyltgvilgktlss
eipdhefftaygpdyvleitpscrpdrnephriqqilnyikgnlkhvv

Timeline for d1vkgb_:

• d1vkgb_ first appeared in SCOP 1.69
  
• d1vkgb_ appears in SCOPe 2.07