SCOPe 2.08: Domain d1vkda1: 1vkd A:1-326

Lineage for d1vkda1 (1vkd A:1-326)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.67: 5-bladed beta-propeller [50933] (4 superfamilies)
   consists of five 4-stranded beta-sheet motifs; meander

4. Superfamily b.67.2: Arabinanase/levansucrase/invertase [75005] (6 families)

5. Family b.67.2.4: TM1225-like predicted glycosylases [110284] (2 proteins)
   Pfam PF04041 DUF377

6. Protein Hypothetical protein TM1225 [110285] (1 species)

7. Species Thermotoga maritima [TaxId:2336] [110286] (1 PDB entry)
   Uniprot Q9X0V2

8. Domain d1vkda1: 1vkd A:1-326 [108644]
   Other proteins in same PDB: d1vkda2
   Structural genomics target
   complexed with trs

Details for d1vkda1

PDB Entry: 1vkd, 2.1 Å

PDB Description: crystal structure of a predicted glycosidase (tm1225) from thermotoga maritima msb8 at 2.10 a resolution

PDB Compounds: (A:) conserved hypothetical protein TM1225

SCOPe Domain Sequences for d1vkda1:

Sequence; same for both SEQRES and ATOM records:

>d1vkda1 b.67.2.4 (A:1-326) Hypothetical protein TM1225 {Thermotoga maritima [TaxId: 2336]}
mkvftekipnipweerpegytgpvwrysknpiigrnpvpkgarvfnsavvpyngefvgvf
ridhkntrpflhfgrskdginweiepeeiqwvdvngepfqpsyaydprvvkiedtyyitf
ctddhgptigvgmtkdfktfvrlpnayvpfnrngvlfprkingkyvmlnrpsdnghtpfg
diflsespdmihwgnhrfvlgrssynwwenlkigagpypietsegwlliyhgvtltcngy
vysfgaalldlddpskvlyrsryylltpeeeyetvgfvpnvvfpcaalcdadtgrvaiyy
gaadthvalafgyideivdfvkrnsm

Timeline for d1vkda1:

• d1vkda1 first appeared in SCOP 1.69, called d1vkda_
  
• d1vkda1 appears in SCOPe 2.07