SCOPe 2.08: Domain d1v6ya1: 1v6y A:3-315

Lineage for d1v6ya1 (1v6y A:3-315)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.3: beta-glycanases [51487] (27 proteins)
   consist of a number of sequence families

6. Protein Xylanase A, catalytic core [51514] (8 species)

7. Species Streptomyces olivaceoviridis [TaxId:1921] [51519] (12 PDB entries)
   Uniprot Q7SI98
   N-terminal domain; fused with a ricin A-like beta-trefoil domain

8. Domain d1v6ya1: 1v6y A:3-315 [108401]
   Other proteins in same PDB: d1v6ya2
   Artificial chimera

Details for d1v6ya1

PDB Entry: 1v6y, 2.2 Å

PDB Description: crystal structure of chimeric xylanase between streptomyces olivaceoviridis e-86 fxyn and cellulomonas fimi cex

PDB Compounds: (A:) Beta-xylanase,Exoglucanase/xylanase

SCOPe Domain Sequences for d1v6ya1:

Sequence; same for both SEQRES and ATOM records:

>d1v6ya1 c.1.8.3 (A:3-315) Xylanase A, catalytic core {Streptomyces olivaceoviridis [TaxId: 1921]}
stlgaaaaqsgryfgtaiasgklgdsayttiasrefnmvtaenemkidatepqrgqfnfs
agdrvynwavqngkqvrghtlawhsqqpgwmqslsgstlrqamidhingvmghykgkiaq
wdvvneafsddgsggrrdsnlqrtgndwievafrtaraadpaaklcyndynienwtwakt
qgvynmvrdfkqrgvpidcvgfqshlivgqvpgdfrqnlqrfadlgvdvriteldirmrt
psdatklatqaadykkvvqacmqvtrcqgvtvwgitdkyswvpdvfpgegaalvwdasya
kkpayaavmeafg

Timeline for d1v6ya1:

• d1v6ya1 first appeared in SCOP 1.69, called d1v6ya_
  
• d1v6ya1 appears in SCOPe 2.07