SCOP 1.71: Domain d1upgb_: 1upg B:

Lineage for d1upgb_ (1upg B:)

1. Root: SCOP 1.71

2. Class a: All alpha proteins [46456] (226 folds)

3. Fold a.2: Long alpha-hairpin [46556] (13 superfamilies)
   2 helices; antiparallel hairpin, left-handed twist

4. Superfamily a.2.13: Transcriptional repressor TraM [109631] (1 family)
   similar structure to L29p (scop_sf 46561); contains extra short helix; forms homodimer: an open bundle

5. Family a.2.13.1: Transcriptional repressor TraM [109632] (1 protein)

6. Protein Transcriptional repressor TraM [109633] (1 species)

7. Species Agrobacterium tumefaciens [TaxId:358] [109634] (3 PDB entries)

8. Domain d1upgb_: 1upg B: [107993]

Details for d1upgb_

PDB Entry: 1upg, 1.8 Å

PDB Description: crystal structure of the quorum-sensing protein tram from agrobacterium tumefaciens

SCOP Domain Sequences for d1upgb_:

Sequence; same for both SEQRES and ATOM records:

>d1upgb_ a.2.13.1 (B:) Transcriptional repressor TraM {Agrobacterium tumefaciens}
meledanvtkkvelrpligltrglpptdletitidairthrrlvekadelfqalpetykt
gqacggpqhiryieasiemhaqmsalntlysilgfipkvv

Timeline for d1upgb_:

• d1upgb_ first appeared in SCOP 1.69
  
• d1upgb_ appears in SCOP 1.73
  
• d1upgb_ appears in the current release, SCOPe 2.08