Lineage for d1upga_ (1upg A:)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1979497Fold a.2: Long alpha-hairpin [46556] (20 superfamilies)
    2 helices; antiparallel hairpin, left-handed twist
  4. 1980254Superfamily a.2.13: Transcriptional repressor TraM [109631] (1 family) (S)
    similar structure to L29p (46561); contains extra short helix; forms homodimer: an open bundle
    automatically mapped to Pfam PF09228
  5. 1980255Family a.2.13.1: Transcriptional repressor TraM [109632] (2 protein domains)
  6. 1980256Protein Transcriptional repressor TraM [109633] (1 species)
  7. 1980257Species Agrobacterium tumefaciens [TaxId:358] [109634] (3 PDB entries)
    Uniprot Q57471
  8. 1980262Domain d1upga_: 1upg A: [107992]

Details for d1upga_

PDB Entry: 1upg (more details), 1.8 Å

PDB Description: crystal structure of the quorum-sensing protein tram from agrobacterium tumefaciens
PDB Compounds: (A:) transcriptional repressor tram

SCOPe Domain Sequences for d1upga_:

Sequence; same for both SEQRES and ATOM records: (download)

>d1upga_ a.2.13.1 (A:) Transcriptional repressor TraM {Agrobacterium tumefaciens [TaxId: 358]}
velrpligltrglpptdletitidairthrrlvekadelfqalpetyktgqacggpqhir
yieasiemhaqmsalntlysilgfipkvvvn

SCOPe Domain Coordinates for d1upga_:

Click to download the PDB-style file with coordinates for d1upga_.
(The format of our PDB-style files is described here.)

Timeline for d1upga_:

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d1upgb_