Lineage for d1um2b2 (1um2 B:464-581)

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2531154Fold d.95: Homing endonuclease-like [55603] (2 superfamilies)
    alpha-beta(2)-alpha-beta(2)-alpha; 2 layers: a/b; antiparallel sheet 1243
  4. 2531165Superfamily d.95.2: Homing endonucleases [55608] (3 families) (S)
  5. 2531259Family d.95.2.2: Intein endonuclease [55614] (2 proteins)
    duplication: contains tandem repeat of this fold
  6. 2531264Protein VMA1-derived endonuclease (VDE) PI-SceI [55615] (1 species)
    homing endonuclease with protein splicing activity
  7. 2531265Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [55616] (7 PDB entries)
    Uniprot P17255 284-737
  8. 2531284Domain d1um2b2: 1um2 B:464-581 [107950]
    Other proteins in same PDB: d1um2a1, d1um2b1

Details for d1um2b2

PDB Entry: 1um2 (more details), 2.9 Å

PDB Description: crystal structure of the vma1-derived endonuclease with the ligated extein segment
PDB Compounds: (B:) endonuclease pi-scei

SCOPe Domain Sequences for d1um2b2:

Sequence, based on SEQRES records: (download)

>d1um2b2 d.95.2.2 (B:464-581) VMA1-derived endonuclease (VDE) PI-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
pilyendhffdymqkskfhltiegpkvlayllglwigdglsdratfsvdsrdtslmervt
eyaeklnlcaeykdrkepqvaktvnlyskvvrgngirnnlntenplwdaivglgflkd

Sequence, based on observed residues (ATOM records): (download)

>d1um2b2 d.95.2.2 (B:464-581) VMA1-derived endonuclease (VDE) PI-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
pilyendhffdymqkskfhltiegpkvlayllglwigdglsdratfsvdsrdtslmervt
eyaeklnlcaeykdrkepqvaktvnlyslntenplwdaivglgflkd

SCOPe Domain Coordinates for d1um2b2:

Click to download the PDB-style file with coordinates for d1um2b2.
(The format of our PDB-style files is described here.)

Timeline for d1um2b2: