Class b: All beta proteins [48724] (180 folds) |
Fold b.86: Hedgehog/intein (Hint) domain [51293] (1 superfamily) complex fold made of five beta-hairpin units and a b-ribbon arc |
Superfamily b.86.1: Hedgehog/intein (Hint) domain [51294] (3 families) duplication: contains two intertwined structural repeats |
Family b.86.1.2: Intein (protein splicing domain) [51298] (5 proteins) |
Protein VMA1-derived endonuclease (VDE) PI-Scei intein [51299] (1 species) also contains a homing endonuclease and DNA-binding domains |
Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [51300] (8 PDB entries) Uniprot P17255 284-737 |
Domain d1um2a1: 1um2 A:284-463,A:699-737 [107946] Other proteins in same PDB: d1um2a2, d1um2a3, d1um2b2, d1um2b3 complexed with the ligated extein segment (Uniprot P17255 281-283,738-741), chains C and D |
PDB Entry: 1um2 (more details), 2.9 Å
SCOPe Domain Sequences for d1um2a1:
Sequence, based on SEQRES records: (download)
>d1um2a1 b.86.1.2 (A:284-463,A:699-737) VMA1-derived endonuclease (VDE) PI-Scei intein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} sfakgtnvlmadgsiecienievgnkvmgkdgrpreviklprgretmysvvqksqhrahk sdssrevpellkftcnatnelvvrtprsvrrlsrtikgveyfevitfemgqkkapdgriv elvkevsksypisegperanelvesyrkasnkayfewtieardlsllgshvrkatyqtya Xcrgfyfelqelkeddyygitlsddsdhqfllanqvvvhn
>d1um2a1 b.86.1.2 (A:284-463,A:699-737) VMA1-derived endonuclease (VDE) PI-Scei intein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} sfakgtnvlmadgsiecienievgnkvmgkdgrpreviklprgretmysvvqkspellkf tcnatnelvvrtprsvrrlsrtikgveyfevitfemgqkkapdgrivelvkevsksypis egperanelvesyrkasnkayfewtieardlsllgshvrkatyqtyaXcrgfyfelqelk eddyygitlsddsdhqfllanqvvvhn
Timeline for d1um2a1: