SCOP 1.71: Domain d1u5td1: 1u5t D:2-125

Lineage for d1u5td1 (1u5t D:2-125)

1. Root: SCOP 1.71

2. Class a: All alpha proteins [46456] (226 folds)

3. Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
   core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down

4. Superfamily a.4.5: "Winged helix" DNA-binding domain [46785] (61 families)
   contains a small beta-sheet (wing)

5. Family a.4.5.54: Vacuolar sorting protein domain [109692] (3 proteins)
   duplication: tandem repeat of two "winged-helix" domains

6. Protein Vacuolar protein sorting-associated protein VPS25 [109697] (1 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [109698] (2 PDB entries)

8. Domain d1u5td1: 1u5t D:2-125 [107690]
   Other proteins in same PDB: d1u5ta1, d1u5ta2, d1u5tb1, d1u5tb2

Details for d1u5td1

PDB Entry: 1u5t, 3.6 Å

PDB Description: Structure of the ESCRT-II endosomal trafficking complex

SCOP Domain Sequences for d1u5td1:

Sequence, based on SEQRES records:

>d1u5td1 a.4.5.54 (D:2-125) Vacuolar protein sorting-associated protein VPS25 {Baker's yeast (Saccharomyces cerevisiae)}
salppvysfpplytrqpnsltrrqqistwidiisqycktkkiwymsvdgtvindneldsg
stdnddskkisknlfnnediqrsvsqvfideiwsqmtkegkclpidqsgrrssnttttry
filw

Sequence, based on observed residues (ATOM records):

>d1u5td1 a.4.5.54 (D:2-125) Vacuolar protein sorting-associated protein VPS25 {Baker's yeast (Saccharomyces cerevisiae)}
salppvysfpplytrqpnsltrrqqistwidiisqycktkkiwymsvdgtsknlfnnedi
qrsvsqvfideiwsqmtkegkclpidqsgrrssnttttryfilw

Timeline for d1u5td1:

• d1u5td1 first appeared in SCOP 1.69
  
• d1u5td1 appears in SCOP 1.73
  
• d1u5td1 appears in the current release, SCOPe 2.08