SCOPe 2.05: Domain d1u0ja_: 1u0j A:

Lineage for d1u0ja_ (1u0j A:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
   3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (25 families)
   division into families based on beta-sheet topologies

5. Family c.37.1.20: Extended AAA-ATPase domain [81269] (29 proteins)
   fold is similar to that of RecA, but lacks the last two strands, followed by a family-specific Arg-finger domain

6. Protein Rep 40 protein helicase domain [110564] (1 species)

7. Species Adeno-associated virus 2, AAV2 [TaxId:10804] [110565] (2 PDB entries)
   Uniprot P03132 225-490

8. Domain d1u0ja_: 1u0j A: [107546]
   complexed with adp

Details for d1u0ja_

PDB Entry: 1u0j, 2.1 Å

PDB Description: crystal structure of aav2 rep40-adp complex

PDB Compounds: (A:) DNA replication protein

SCOPe Domain Sequences for d1u0ja_:

Sequence, based on SEQRES records:

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}
gmelvgwlvdkgitsekqwiqedqasyisfnaasnsrsqikaaldnagkimsltktapdy
lvgqqpvedissnriykilelngydpqyaasvflgwatkkfgkrntiwlfgpattgktni
aeaiahtvpfygcvnwtnenfpfndcvdkmviwweegkmtakvvesakailggskvrvdq
kckssaqidptpvivtsntnmcavidgnsttfehqqplqdrmfkfeltrrldhdfgkvtk
qevkdffrwakdhvvevehefyvkkgg

Sequence, based on observed residues (ATOM records):

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}
gmelvgwlvdkgitsekqwiqedqasyisfnaasnsrsqikaaldnagkimsltktapdy
lvgqqpvedissnriykilelngydpqyaasvflgwatkkfgkrntiwlfgpattgktni
aeaiahtvpfygcvnwtnenfpfndcvdkmviwweegkmtakvvesakailggskvrvsa
qidptpvivtsntnmcavidgnsttfehqqplqdrmfkfeltrrldhdfgkvtkqevkdf
frwakdhvvevehefyvkkgg

Timeline for d1u0ja_:

• d1u0ja_ first appeared in SCOP 1.69
  
• d1u0ja_ appears in SCOPe 2.04
  
• d1u0ja_ is called d1u0ja1 in SCOPe 2.06
  
• d1u0ja_ appears in the current release, SCOPe 2.08, called d1u0ja1