SCOPe 2.08: Domain d1u0ja1: 1u0j A:225-490

Lineage for d1u0ja1 (1u0j A:225-490)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
   3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (27 families)
   division into families based on beta-sheet topologies

5. Family c.37.1.20: Extended AAA-ATPase domain [81269] (43 proteins)
   fold is similar to that of RecA, but lacks the last two strands, followed by a family-specific Arg-finger domain

6. Protein Rep 40 protein helicase domain [110564] (1 species)

7. Species Adeno-associated virus 2, AAV2 [TaxId:10804] [110565] (2 PDB entries)
   Uniprot P03132 225-490

8. Domain d1u0ja1: 1u0j A:225-490 [107546]
   Other proteins in same PDB: d1u0ja2
   complexed with adp
   has additional subdomain(s) that are not in the common domain

Details for d1u0ja1

PDB Entry: 1u0j, 2.1 Å

PDB Description: crystal structure of aav2 rep40-adp complex

PDB Compounds: (A:) DNA replication protein

SCOPe Domain Sequences for d1u0ja1:

Sequence, based on SEQRES records:

>d1u0ja1 c.37.1.20 (A:225-490) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}
melvgwlvdkgitsekqwiqedqasyisfnaasnsrsqikaaldnagkimsltktapdyl
vgqqpvedissnriykilelngydpqyaasvflgwatkkfgkrntiwlfgpattgktnia
eaiahtvpfygcvnwtnenfpfndcvdkmviwweegkmtakvvesakailggskvrvdqk
ckssaqidptpvivtsntnmcavidgnsttfehqqplqdrmfkfeltrrldhdfgkvtkq
evkdffrwakdhvvevehefyvkkgg

Sequence, based on observed residues (ATOM records):

>d1u0ja1 c.37.1.20 (A:225-490) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}
melvgwlvdkgitsekqwiqedqasyisfnaasnsrsqikaaldnagkimsltktapdyl
vgqqpvedissnriykilelngydpqyaasvflgwatkkfgkrntiwlfgpattgktnia
eaiahtvpfygcvnwtnenfpfndcvdkmviwweegkmtakvvesakailggskvrvsaq
idptpvivtsntnmcavidgnsttfehqqplqdrmfkfeltrrldhdfgkvtkqevkdff
rwakdhvvevehefyvkkgg

Timeline for d1u0ja1:

• d1u0ja1 first appeared in SCOP 1.69, called d1u0ja_
  
• d1u0ja1 appears in SCOPe 2.07