SCOP 1.69: Domain d1u04a2: 1u04 A:324-770

Lineage for d1u04a2 (1u04 A:324-770)

1. Root: SCOP 1.69

2. Class c: Alpha and beta proteins (a/b) [51349] (136 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (10 families)
   consists of one domain of this fold

5. Family c.55.3.10: PIWI domain (Pfam 02171) [110640] (1 protein)

6. Protein Argonaute homologue PF0537 [110641] (1 species)
   includes the middle domain

7. Species Pyrococcus furiosus [TaxId:186497] [110642] (1 PDB entry)

8. Domain d1u04a2: 1u04 A:324-770 [107540]
   Other proteins in same PDB: d1u04a1

Details for d1u04a2

PDB Entry: 1u04, 2.25 Å

PDB Description: crystal structure of full length argonaute from pyrococcus furiosus

SCOP Domain Sequences for d1u04a2:

Sequence, based on SEQRES records:

>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus}
iaqelenkirvrddkgnsvpisqlnvqksqlllwtnysrkypvilpyevpekfrkireip
mfiildsglladiqnfatnefrelvksmyyslakkynslakkarstneiglpfldfrgke
kvitedlnsdkgiievveqvssfmkgkelglafiaarnklssekfeeikrrlfnlnvisq
vvnedtlknkrdkydrnrldlfvrhnllfqvlsklgvkyyvldyrfnydyiigidvapmk
rsegyiggsavmfdsqgyirkivpikigeqrgesvdmneffkemvdkfkefnikldnkki
lllrdgritnneeeglkyisemfdievvtmdviknhpvrafanmkmyfnlggaiyliphk
lkqakgtpipiklakkriikngkvekqsitrqdvldifiltrlnygsisadmrlpapvhy
ahkfanairnewkikeeflaegflyfv

Sequence, based on observed residues (ATOM records):

>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus}
iaqelenkirvrddkgnsvpisqllwtnysrkypvilpyevpekfrkireipmfiildsg
lladiqnfatnefrelvksmyyekvitedlnsdkgiievveqvssfmkgkelglafiaar
nklssekfeeikrrlfnlnvisqvvnedtlknkrdkydrnrldlfvrhnllfqvlsklgv
kyyvldyrfnydyiigidvapmkrsegyiggsavmfdsqgyirkivpikigeqrgesvdm
neffkemvdkfkefnikldnkkilllrdgritnneeeglkyisemfdievvtmdviknhp
vrafanmkmyfnlggaiyliphklkqakgtpipiklakkriikngkvekqsitrqdvldi
filtrlnygsisadmrlpapvhyahkfanairnewkikeeflaegflyfv

Timeline for d1u04a2:

• d1u04a2 is new in SCOP 1.69
  
• d1u04a2 appears in SCOP 1.71
  
• d1u04a2 last appears in SCOPe 2.05