SCOPe 2.03: Domain d1u04a1: 1u04 A:2-323

Lineage for d1u04a1 (1u04 A:2-323)

1. Root: SCOPe 2.03

2. Class b: All beta proteins [48724] (174 folds)

3. Fold b.34: SH3-like barrel [50036] (21 superfamilies)
   barrel, partly opened; n*=4, S*=8; meander
   the last strand is interrupted by a turn of 3-10 helix

4. Superfamily b.34.14: PAZ domain [101690] (1 family)

5. Family b.34.14.1: PAZ domain [101691] (6 proteins)

6. Protein Argonaute homologue PF0537 [110167] (1 species)
   includes the N-terminal domain

7. Species Pyrococcus furiosus [TaxId:2261] [110168] (3 PDB entries)
   Uniprot Q8U3D2

8. Domain d1u04a1: 1u04 A:2-323 [107539]
   Other proteins in same PDB: d1u04a2
   protein/RNA complex

Details for d1u04a1

PDB Entry: 1u04, 2.25 Å

PDB Description: crystal structure of full length argonaute from pyrococcus furiosus

PDB Compounds: (A:) hypothetical protein PF0537

SCOPe Domain Sequences for d1u04a1:

Sequence, based on SEQRES records:

>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]}
kaivvinlvkinkkiipdkiyvyrlfndpeeelqkegysiyrlayenvgividpenliia
ttkeleyegefipegeisfselrndyqsklvlrllkengigeyelskllrkfrkpktfgd
ykvipsvemsvikhdedfylvihiihqiqsmktlwelvnkdpkeleeflmthkenlmlkd
iasplktvykpcfeeytkkpkldhnqeivkywynyhierywntpeaklefyrkfgqvdlk
qpailakfaskikknknykiyllpqlvvptynaeqlesdvakeileytklmpeerkelle
nilaevdsdiidkslseievek

Sequence, based on observed residues (ATOM records):

>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]}
kaivvinlvkinkkiipdkiyvyrlysiyrlayenvgividpenliiattkeleyegefi
pegeisfselrndyqsklvlrllkengigeyelskllrkfrkpktfgdykvipsvemsvi
khdedfylvihiihqiqsmktlwelvnkdpkeleeflmthkenlmlkdiasplktvykpc
feeytkkpkldhnqeivkywynyhierywntpeaklefyrkfgqvdlkqpailakfaskn
ykiyllpqlvvptynaeqlakeileytklmpeerkellenilaevdsdiidkslseieve
k

Timeline for d1u04a1:

• d1u04a1 first appeared in SCOP 1.69
  
• d1u04a1 appears in SCOPe 2.02
  
• d1u04a1 appears in SCOPe 2.04
  
• d1u04a1 appears in the current release, SCOPe 2.08