Lineage for d1u04a1 (1u04 A:1-323)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2045654Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. 2047718Superfamily b.34.14: PAZ domain [101690] (2 families) (S)
  5. 2047719Family b.34.14.1: PAZ domain [101691] (6 protein domains)
  6. 2047740Protein Argonaute homologue PF0537 [110167] (1 species)
    includes the N-terminal domain
  7. 2047741Species Pyrococcus furiosus [TaxId:2261] [110168] (3 PDB entries)
    Uniprot Q8U3D2
  8. 2047742Domain d1u04a1: 1u04 A:1-323 [107539]
    Other proteins in same PDB: d1u04a3, d1u04a4, d1u04a5
    protein/RNA complex

Details for d1u04a1

PDB Entry: 1u04 (more details), 2.25 Å

PDB Description: Crystal structure of full length Argonaute from Pyrococcus furiosus
PDB Compounds: (A:) hypothetical protein PF0537

SCOPe Domain Sequences for d1u04a1:

Sequence, based on SEQRES records: (download)

>d1u04a1 b.34.14.1 (A:1-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]}
mkaivvinlvkinkkiipdkiyvyrlfndpeeelqkegysiyrlayenvgividpenlii
attkeleyegefipegeisfselrndyqsklvlrllkengigeyelskllrkfrkpktfg
dykvipsvemsvikhdedfylvihiihqiqsmktlwelvnkdpkeleeflmthkenlmlk
diasplktvykpcfeeytkkpkldhnqeivkywynyhierywntpeaklefyrkfgqvdl
kqpailakfaskikknknykiyllpqlvvptynaeqlesdvakeileytklmpeerkell
enilaevdsdiidkslseievek

Sequence, based on observed residues (ATOM records): (download)

>d1u04a1 b.34.14.1 (A:1-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]}
mkaivvinlvkinkkiipdkiyvyrlysiyrlayenvgividpenliiattkeleyegef
ipegeisfselrndyqsklvlrllkengigeyelskllrkfrkpktfgdykvipsvemsv
ikhdedfylvihiihqiqsmktlwelvnkdpkeleeflmthkenlmlkdiasplktvykp
cfeeytkkpkldhnqeivkywynyhierywntpeaklefyrkfgqvdlkqpailakfask
nykiyllpqlvvptynaeqlakeileytklmpeerkellenilaevdsdiidkslseiev
ek

SCOPe Domain Coordinates for d1u04a1:

Click to download the PDB-style file with coordinates for d1u04a1.
(The format of our PDB-style files is described here.)

Timeline for d1u04a1: